Yutaka Suzuki
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Computer Science
Yutaka Suzuki's Degrees
- PhD Computer Science University of Tokyo
- Masters Computer Science University of Tokyo
- Bachelors Computer Science University of Tokyo
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(Suggest an Edit or Addition)Yutaka Suzuki's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- Frequent pathway mutations of splicing machinery in myelodysplasia (2011) (1799)
- The Physcomitrella Genome Reveals Evolutionary Insights into the Conquest of Land by Plants (2008) (1736)
- Genome sequence of the ultrasmall unicellular red alga Cyanidioschyzon merolae 10D (2004) (1047)
- Integrated molecular analysis of clear-cell renal cell carcinoma (2013) (909)
- Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice (2003) (882)
- Complete sequencing and characterization of 21,243 full-length human cDNAs (2004) (879)
- A transcription factor response element for gene expression during circadian night (2002) (851)
- A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control consortium (2014) (799)
- Genome evolution in the allotetraploid frog Xenopus laevis (2016) (691)
- Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome (2017) (684)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (2004) (565)
- Phosphate-activated glutaminase (GLS2), a p53-inducible regulator of glutamine metabolism and reactive oxygen species (2010) (563)
- Long noncoding RNA NEAT1-dependent SFPQ relocation from promoter region to paraspeckle mediates IL8 expression upon immune stimuli. (2014) (533)
- DKK1, a negative regulator of Wnt signaling, is a target of the β-catenin/TCF pathway (2004) (521)
- HDAC8 mutations in Cornelia de Lange Syndrome affect the cohesin acetylation cycle (2012) (503)
- Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (2005) (491)
- Thyrotrophin in the pars tuberalis triggers photoperiodic response (2008) (460)
- Contribution of Intragenic DNA Methylation in Mouse Gametic DNA Methylomes to Establish Oocyte-Specific Heritable Marks (2012) (459)
- Draft Assembly of the Symbiodinium minutum Nuclear Genome Reveals Dinoflagellate Gene Structure (2013) (436)
- A single female-specific piRNA is the primary determiner of sex in the silkworm (2014) (370)
- Genome-wide determination of RNA stability reveals hundreds of short-lived noncoding transcripts in mammals (2012) (364)
- Integrative Annotation of 21,037 Human Genes Validated by Full-Length cDNA Clones (2004) (346)
- The functional consequences of alternative promoter use in mammalian genomes. (2008) (339)
- Malt1-Induced Cleavage of Regnase-1 in CD4+ Helper T Cells Regulates Immune Activation (2013) (280)
- The Chara Genome: Secondary Complexity and Implications for Plant Terrestrialization (2018) (278)
- Regnase-1 and Roquin Regulate a Common Element in Inflammatory mRNAs by Spatiotemporally Distinct Mechanisms (2015) (276)
- The Landscape of C. elegans 3′UTRs (2010) (270)
- Genomic Landscape of Esophageal Squamous Cell Carcinoma in a Japanese Population. (2016) (244)
- Large-scale identification and characterization of human genes that activate NF-κB and MAPK signaling pathways (2003) (240)
- DBTSS: DataBase of human Transcriptional Start Sites and full-length cDNAs (2002) (239)
- The polycomb protein Ezh2 regulates differentiation and plasticity of CD4(+) T helper type 1 and type 2 cells. (2013) (236)
- Genome Sequence of the Tsetse Fly (Glossina morsitans): Vector of African Trypanosomiasis (2014) (233)
- High-resolution DNA methylome analysis of primordial germ cells identifies gender-specific reprogramming in mice (2013) (230)
- Extremotolerant tardigrade genome and improved radiotolerance of human cultured cells by tardigrade-unique protein (2016) (230)
- DBTSS: database of transcription start sites, progress report 2008 (2007) (212)
- Expansions of intronic TTTCA and TTTTA repeats in benign adult familial myoclonic epilepsy (2018) (193)
- The Molecular Characterization and Tissue Distribution of the Human Cysteinyl Leukotriene CysLT2 Receptor (2000) (190)
- A genetic mechanism for female-limited Batesian mimicry in Papilio butterfly (2015) (187)
- Functional Gene Screening System Identified TRPV4 as a Regulator of Chondrogenic Differentiation* (2007) (184)
- Ezh2 augments leukemogenicity by reinforcing differentiation blockage in acute myeloid leukemia. (2012) (181)
- Large-scale identification and characterization of human genes that activate NF-kappaB and MAPK signaling pathways. (2003) (177)
- Layer-specific morphological and molecular differences in neocortical astrocytes and their dependence on neuronal layers (2018) (175)
- Concurrent loss of Ezh2 and Tet2 cooperates in the pathogenesis of myelodysplastic disorders (2013) (174)
- Promoter prediction analysis on the whole human genome (2004) (167)
- Identification of hundreds of novel UPF1 target transcripts by direct determination of whole transcriptome stability (2012) (154)
- Long-term expansion of alveolar stem cells derived from human iPS cells in organoids (2017) (151)
- Genetic basis of the highly efficient yeast Kluyveromyces marxianus: complete genome sequence and transcriptome analyses (2015) (138)
- Phytochrome controls alternative splicing to mediate light responses in Arabidopsis (2014) (137)
- Genome-Wide Profiling of the Core Clock Protein BMAL1 Targets Reveals a Strict Relationship with Metabolism (2010) (133)
- Chromatin-Associated Periodicity in Genetic Variation Downstream of Transcriptional Start Sites (2009) (130)
- Integrated Multiregional Analysis Proposing a New Model of Colorectal Cancer Evolution (2016) (130)
- The Bombyx ovary-derived cell line endogenously expresses PIWI/PIWI-interacting RNA complexes. (2009) (129)
- Expression profiling and differential screening between hepatoblastomas and the corresponding normal livers: identification of high expression of the PLK1 oncogene as a poor-prognostic indicator of hepatoblastomas (2004) (127)
- Genome-wide characterization of transcriptional start sites in humans by integrative transcriptome analysis. (2011) (122)
- Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and development (2013) (120)
- 5′-end SAGE for the analysis of transcriptional start sites (2004) (120)
- Genome sequence and analysis of the Japanese morning glory Ipomoea nil (2016) (119)
- Sensitivity and engineered resistance of myeloid leukemia cells to BRD9 inhibition (2016) (118)
- NSD3-Short Is an Adaptor Protein that Couples BRD4 to the CHD8 Chromatin Remodeler. (2015) (116)
- Massive transcriptional start site analysis of human genes in hypoxia cells (2009) (115)
- Comprehensive detection of human terminal oligo-pyrimidine (TOP) genes and analysis of their characteristics (2008) (112)
- CLOCK-Controlled Polyphonic Regulation of Circadian Rhythms through Canonical and Noncanonical E-Boxes (2014) (112)
- Targeted disruption of LIG‐1 gene results in psoriasiform epidermal hyperplasia 1 (2002) (109)
- RNA-seq Transcriptional Profiling of an Arbuscular Mycorrhiza Provides Insights into Regulated and Coordinated Gene Expression in Lotus japonicus and Rhizophagus irregularis. (2015) (108)
- The first murine zygotic transcription is promiscuous and uncoupled from splicing and 3′ processing (2015) (108)
- Transcription factor DUO1 generated by neo-functionalization is associated with evolution of sperm differentiation in plants (2018) (108)
- Analysis of small human proteins reveals the translation of upstream open reading frames of mRNAs. (2004) (103)
- Genome-wide analysis reveals strong correlation between CpG islands with nearby transcription start sites of genes and their tissue specificity. (2005) (102)
- DNA methylation and gene expression dynamics during spermatogonial stem cell differentiation in the early postnatal mouse testis (2015) (101)
- Identification of the carotenoid modifying gene PALE YELLOW PETAL 1 as an essential factor in xanthophyll esterification and yellow flower pigmentation in tomato (Solanum lycopersicum). (2014) (101)
- Minor zygotic gene activation is essential for mouse preimplantation development (2018) (98)
- Construction of a full-length enriched and a 5'-end enriched cDNA library using the oligo-capping method. (2003) (98)
- Coelacanth genomes reveal signatures for evolutionary transition from water to land (2010) (97)
- Condensin targets and reduces unwound DNA structures associated with transcription in mitotic chromosome condensation (2015) (96)
- Long terminal repeats power evolution of genes and gene expression programs in mammalian oocytes and zygotes (2017) (95)
- STAT6-mediated displacement of polycomb by trithorax complex establishes long-term maintenance of GATA3 expression in T helper type 2 cells (2010) (93)
- Single-cell sequencing techniques from individual to multiomics analyses (2020) (92)
- Aberrant transcriptional regulations in cancers: genome, transcriptome and epigenome analysis of lung adenocarcinoma cell lines (2014) (91)
- Large Scale Full-Length cDNA Sequencing Reveals a Unique Genomic Landscape in a Lepidopteran Model Insect, Bombyx mori (2013) (89)
- DBTSS: DataBase of Human Transcription Start Sites, progress report 2006 (2005) (89)
- Diversity of Translation Start Sites May Define Increased Complexity of the Human Short ORFeome*S (2007) (87)
- Methylome Diversification through Changes in DNA Methyltransferase Sequence Specificity (2014) (86)
- Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and development (2011) (86)
- Transcriptome Analysis of Mouse Brain Infected with Toxoplasma gondii (2013) (85)
- Differentiation of core promoter architecture between plants and mammals revealed by LDSS analysis (2007) (82)
- BTSS, DataBase of Transcriptional Start Sites: progress report 2004 (2004) (81)
- A New lncRNA, APTR, Associates with and Represses the CDKN1A/p21 Promoter by Recruiting Polycomb Proteins (2014) (78)
- Molecular Cloning, mRNA Expression and Chromosomal Localization of Mouse Angiotensin-converting Enzyme-related Carboxypeptidase (mACE2) (2002) (77)
- DBTSS: DataBase of Transcriptional Start Sites progress report in 2012 (2011) (77)
- OASIS is a transcriptional activator of CREB/ATF family with a transmembrane domain. (2002) (77)
- Dysregulation of spliceosome gene expression in advanced prostate cancer by RNA-binding protein PSF (2017) (76)
- Expression profiling and characterization of 4200 genes cloned from primary neuroblastomas: identification of 305 genes differentially expressed between favorable and unfavorable subsets (2003) (75)
- Functionally distinct Gata3/Chd4 complexes coordinately establish T helper 2 (Th2) cell identity (2013) (74)
- A temporal shift of the evolutionary principle shaping intratumor heterogeneity in colorectal cancer (2018) (72)
- Single-cell analysis of lung adenocarcinoma cell lines reveals diverse expression patterns of individual cells invoked by a molecular target drug treatment (2015) (71)
- Arid5b facilitates chondrogenesis by recruiting the histone demethylase Phf2 to Sox9-regulated genes (2013) (71)
- Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions. (2004) (69)
- Combined Mutation of Apc, Kras, and Tgfbr2 Effectively Drives Metastasis of Intestinal Cancer. (2018) (69)
- The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts* (2007) (66)
- Possible involvement of an FKBP family member protein from a psychrotrophic bacterium Shewanella sp. SIB1 in cold-adaptation. (2004) (65)
- ADARB1 catalyzes circadian A-to-I editing and regulates RNA rhythm (2016) (65)
- Common inheritance of chromosome Ia associated with clonal expansion of Toxoplasma gondii. (2006) (65)
- BRIC-seq: a genome-wide approach for determining RNA stability in mammalian cells. (2014) (64)
- Identification of a lung adenocarcinoma cell line with CCDC6‐RET fusion gene and the effect of RET inhibitors in vitro and in vivo (2013) (64)
- Analysis of transcriptomes of human malaria parasite Plasmodium falciparum using full-length enriched library: identification of novel genes and diverse transcription start sites of messenger RNAs. (2002) (64)
- Isolation, tissue expression, and chromosomal assignment of human RGS5, a novel G-protein signaling regulator gene (1998) (63)
- Comparative Genome Analysis of Three Eukaryotic Parasites with Differing Abilities To Transform Leukocytes Reveals Key Mediators of Theileria-Induced Leukocyte Transformation (2012) (62)
- Genome-Wide Analysis Reveals Unique Regulation of Transcription of Th2-Specific Genes by GATA3 (2011) (62)
- Direct binding of Ataxin-2 to distinct elements in 3' UTRs promotes mRNA stability and protein expression. (2014) (62)
- HTLV-1 bZIP Factor Impairs Anti-viral Immunity by Inducing Co-inhibitory Molecule, T Cell Immunoglobulin and ITIM Domain (TIGIT) (2016) (62)
- The Endosymbiotic Bacterium Wolbachia Selectively Kills Male Hosts by Targeting the Masculinizing Gene (2015) (61)
- Interactive transcriptome analysis of malaria patients and infecting Plasmodium falciparum (2014) (61)
- Characterization of genomic organization of the adenosine A2A receptor gene by molecular and bioinformatics analyses (2004) (60)
- A Genome Scan for Genes Underlying Microgeographic-Scale Local Adaptation in a Wild Arabidopsis Species (2015) (59)
- Hypermutation and unique mutational signatures of occupational cholangiocarcinoma in printing workers exposed to haloalkanes (2016) (58)
- Effects of Alu elements on global nucleosome positioning in the human genome (2010) (57)
- DBTSS provides a tissue specific dynamic view of Transcription Start Sites (2009) (56)
- Setdb1 maintains hematopoietic stem and progenitor cells by restricting the ectopic activation of nonhematopoietic genes. (2016) (56)
- A GC-rich sequence feature in the 3′ UTR directs UPF1-dependent mRNA decay in mammalian cells (2017) (56)
- Jmjd2c histone demethylase enhances the expression of Mdm2 oncogene. (2009) (56)
- RNA-sequencing-based transcriptome and biochemical analyses of steroidal saponin pathway in a complete set of Allium fistulosum—A. cepa monosomic addition lines (2017) (55)
- DBTSS as an integrative platform for transcriptome, epigenome and genome sequence variation data (2014) (54)
- Somatic mutations in plasma cell-free DNA are diagnostic markers for esophageal squamous cell carcinoma recurrence (2016) (54)
- Fugu ESTs: new resources for transcription analysis and genome annotation. (2003) (54)
- Development and validation of a new high-throughput method to investigate the clonality of HTLV-1-infected cells based on provirus integration sites (2014) (53)
- Hsp90 facilitates accurate loading of precursor piRNAs into PIWI proteins (2013) (53)
- HUNT: launch of a full-length cDNA database from the Helix Research Institute (2001) (53)
- Whole exome sequencing in Thai patients with retinitis pigmentosa reveals novel mutations in six genes. (2014) (52)
- Zucchini consensus motifs determine the mechanism of pre-piRNA production (2020) (52)
- Recount: expectation maximization based error correction tool for next generation sequencing data. (2009) (51)
- Detection of phase-dependent transcriptomic changes and Rubisco-mediated CO2 fixation into poly (3-hydroxybutyrate) under heterotrophic condition in Ralstonia eutropha H16 based on RNA-seq and gene deletion analyses (2013) (51)
- High-Resolution Analysis of the 5′-End Transcriptome Using a Next Generation DNA Sequencer (2009) (51)
- cDNA Cloning of a Novel Membrane Glycoprotein That Is Expressed Specifically in Glial Cells in the Mouse Brain (1996) (51)
- Sequencing and phasing cancer mutations in lung cancers using a long-read portable sequencer (2017) (51)
- The CCR4-NOT deadenylase complex controls Atg7-dependent cell death and heart function (2018) (51)
- Sall1 maintains nephron progenitors and nascent nephrons by acting as both an activator and a repressor. (2014) (51)
- Remote reprogramming of hepatic circadian transcriptome by breast cancer (2017) (50)
- Clinical significance of BRAF non-V600E mutations on the therapeutic effects of anti-EGFR monoclonal antibody treatment in patients with pretreated metastatic colorectal cancer: the Biomarker Research for anti-EGFR monoclonal Antibodies by Comprehensive Cancer genomics (BREAC) study (2017) (50)
- GATA-1 and NF-Y cooperate to mediate erythroid-specific transcription of Gfi-1B gene. (2004) (50)
- Signal sequence and keyword trap in silico for selection of full-length human cDNAs encoding secretion or membrane proteins from oligo-capped cDNA libraries. (2005) (50)
- Zygotic amplification of secondary piRNAs during silkworm embryogenesis. (2011) (49)
- H-DBAS: Alternative splicing database of completely sequenced and manually annotated full-length cDNAs based on H-Invitational (2006) (49)
- A role for transcription from a piRNA cluster in de novo piRNA production. (2011) (49)
- Cloning, expression analysis, and chromosomal localization of HIP1R, an isolog of huntingtin interacting protein (HIP1) (1998) (48)
- Regnase-1 Maintains Iron Homeostasis via the Degradation of Transferrin Receptor 1 and Prolyl-Hydroxylase-Domain-Containing Protein 3 mRNAs. (2017) (48)
- Hunt for the tipping point during endocrine resistance process in breast cancer by dynamic network biomarkers (2018) (47)
- Lanthanide-Dependent Regulation of Methylotrophy in Methylobacterium aquaticum Strain 22A (2018) (47)
- Occupancy of tissue-specific cis-regulatory modules by Otx2 and TLE/Groucho for embryonic head specification (2014) (47)
- Opalin, a Transmembrane Sialylglycoprotein Located in the Central Nervous System Myelin Paranodal Loop Membrane* (2008) (47)
- Repeated inversions within a pannier intron drive diversification of intraspecific colour patterns of ladybird beetles (2018) (47)
- The silkworm W chromosome is a source of female-enriched piRNAs. (2011) (46)
- Coordinated Changes in DNA Methylation in Antigen-Specific Memory CD4 T Cells (2013) (46)
- Genome-wide genetic variations are highly correlated with proximal DNA methylation patterns (2012) (45)
- Large-scale identification and characterization of alternative splicing variants of human gene transcripts using 56 419 completely sequenced and manually annotated full-length cDNAs (2006) (45)
- Eosinophil depletion suppresses radiation-induced small intestinal fibrosis (2018) (45)
- H-DBAS: human-transcriptome database for alternative splicing: update 2010 (2009) (44)
- Large-scale analysis of Macaca fascicularis transcripts and inference of genetic divergence between M. fascicularis and M. mulatta (2008) (43)
- Conditional rod photoreceptor ablation reveals Sall1 as a microglial marker and regulator of microglial morphology in the retina (2016) (43)
- RNA‐binding protein NONO promotes breast cancer proliferation by post‐transcriptional regulation of SKP2 and E2F8 (2019) (42)
- Analysis of RNA decay factor mediated RNA stability contributions on RNA abundance (2015) (42)
- Contrasting Expression Patterns of Histone mRNA and microRNA 760 in Patients with Gastric Cancer (2013) (41)
- Evaluation and application of RNA-Seq by MinION (2018) (40)
- ADAR1‐mediated RNA editing is required for thymic self‐tolerance and inhibition of autoimmunity (2018) (40)
- Histone H3K36 trimethylation is essential for multiple silencing mechanisms in fission yeast (2016) (40)
- Identification and Characterization of Cancer Mutations in Japanese Lung Adenocarcinoma without Sequencing of Normal Tissue Counterparts (2013) (40)
- Discovery of an Unconventional Centromere in Budding Yeast Redefines Evolution of Point Centromeres (2015) (40)
- Molecular basis of wing coloration in a Batesian mimic butterfly, Papilio polytes (2013) (39)
- Whole-Genome Sequencing of Theileria parva Strains Provides Insight into Parasite Migration and Diversification in the African Continent (2013) (38)
- Serotyping dengue virus with isothermal amplification and a portable sequencer (2017) (38)
- Nanopore sequencing of drug-resistance-associated genes in malaria parasites, Plasmodium falciparum (2018) (38)
- Long non-coding RNA exchange during the oocyte-to-embryo transition in mice (2017) (38)
- Large hypomethylated domains serve as strong repressive machinery for key developmental genes in vertebrates (2014) (38)
- A novel diagnostic method for malaria using loop-mediated isothermal amplification (LAMP) and MinION™ nanopore sequencer (2017) (37)
- Regnase-1 and Roquin Nonredundantly Regulate Th1 Differentiation Causing Cardiac Inflammation and Fibrosis (2017) (37)
- RNA Sequencing of MCF-7 Breast Cancer Cells Identifies Novel Estrogen-Responsive Genes with Functional Estrogen Receptor-Binding Sites in the Vicinity of Their Transcription Start Sites (2013) (37)
- DBTSS/DBKERO for integrated analysis of transcriptional regulation (2017) (37)
- Epigenetic control of early dendritic cell lineage specification by the transcription factor IRF8 in mice. (2019) (37)
- PAX6 Isoforms, along with Reprogramming Factors, Differentially Regulate the Induction of Cornea-specific Genes (2016) (37)
- Pigment Dispersing Factor Regulates Ecdysone Biosynthesis via Bombyx Neuropeptide G Protein Coupled Receptor-B2 in the Prothoracic Glands of Bombyx mori (2014) (36)
- The transcriptional cofactor TRIM33 prevents apoptosis in B lymphoblastic leukemia by deactivating a single enhancer (2015) (36)
- Discovery of osmotic sensitive transcription factors in fish intestine via a transcriptomic approach (2014) (36)
- Aberrant splicing isoforms detected by full-length transcriptome sequencing as transcripts of potential neoantigens in non-small cell lung cancer (2021) (36)
- Ezh2 regulates the Lin28/let-7 pathway to restrict activation of fetal gene signature in adult hematopoietic stem cells. (2016) (35)
- Transcription Factor IRF8 Governs Enhancer Landscape Dynamics in Mononuclear Phagocyte Progenitors. (2018) (35)
- The tumor suppressor Rb and its related Rbl2 genes are regulated by Utx histone demethylase. (2010) (35)
- FULL-malaria: a database for a full-length enriched cDNA library from human malaria parasite, Plasmodium falciparum (2001) (35)
- p53-inducible DPYSL4 associates with mitochondrial supercomplexes and regulates energy metabolism in adipocytes and cancer cells (2018) (35)
- The comprehensive epigenome map of piRNA clusters (2012) (34)
- Long-read metagenomics using PromethION uncovers oral bacteriophages and their interaction with host bacteria (2021) (34)
- Position-dependent and neuron-specific splicing regulation by the CELF family RNA-binding protein UNC-75 in Caenorhabditis elegans (2013) (34)
- Distinct class of putative "non-conserved" promoters in humans: comparative studies of alternative promoters of human and mouse genes. (2007) (34)
- Bakuchiol Is a Phenolic Isoprenoid with Novel Enantiomer-selective Anti-influenza A Virus Activity Involving Nrf2 Activation* (2015) (34)
- Genome-wide identification and annotation of HIF-1α binding sites in two cell lines using massively parallel sequencing (2010) (33)
- Centaurin-α1 Is a Phosphatidylinositol 3-Kinase-dependent Activator of ERK1/2 Mitogen-activated Protein Kinases* (2006) (33)
- Gata3/Ruvbl2 complex regulates T helper 2 cell proliferation via repression of Cdkn2c expression (2013) (33)
- Translation-dependent unwinding of stem–loops by UPF1 licenses Regnase-1 to degrade inflammatory mRNAs (2019) (33)
- Diverse DNA methylation statuses at alternative promoters of human genes in various tissues. (2006) (33)
- Trans-omic Analysis Reveals Selective Responses to Induced and Basal Insulin across Signaling, Transcriptional, and Metabolic Networks (2018) (33)
- Targeting miR‐223 in neutrophils enhances the clearance of Staphylococcus aureus in infected wounds (2018) (32)
- Low conservation and species-specific evolution of alternative splicing in humans and mice: comparative genomics analysis using well-annotated full-length cDNAs (2008) (32)
- Genomes of Two Chronological Isolates (Helicobacter pylori 2017 and 2018) of the West African Helicobacter pylori Strain 908 Obtained from a Single Patient (2011) (32)
- Screening for possible miRNA-mRNA associations in a colon cancer cell line. (2014) (32)
- Characterization of STAT6 Target Genes in Human B Cells and Lung Epithelial Cells (2011) (31)
- Comparasite: a database for comparative study of transcriptomes of parasites defined by full-length cDNAs (2006) (31)
- Inconsistencies of genome annotations in apicomplexan parasites revealed by 5'-end-one-pass and full-length sequences of oligo-capped cDNAs (2009) (31)
- Transition of differential histone H3 methylation in photoreceptors and other retinal cells during retinal differentiation (2016) (30)
- Clonality of HTLV-1-infected T cells as a risk indicator for development and progression of adult T-cell leukemia. (2017) (30)
- Linking Transcriptional Changes over Time in Stimulated Dendritic Cells to Identify Gene Networks Activated during the Innate Immune Response (2013) (30)
- Detection of APC mosaicism by next-generation sequencing in an FAP patient (2015) (30)
- Induction of Virulence Gene Expression in Staphylococcus aureus by Pulmonary Surfactant (2014) (30)
- Local potentiation of stress-responsive genes by upstream noncoding transcription (2016) (29)
- Internal ribosome entry site-mediated translation of Smad5 in vivo: requirement for a nuclear event (2002) (29)
- Identification of novel interleukin 1 beta family genes in Japanese flounder Paralichthys olivaceus. (2013) (28)
- Neospora caninum Dense Granule Protein 7 Regulates the Pathogenesis of Neosporosis by Modulating Host Immune Response (2018) (28)
- Genome-Wide Gene Expression Profiling Revealed a Critical Role for GATA3 in the Maintenance of the Th2 Cell Identity (2013) (28)
- Analysis on Gene Expression Profile in Oncospheres and Early Stage Metacestodes from Echinococcus multilocularis (2016) (28)
- Genome of Helicobacter pylori Strain 908 (2010) (28)
- Identification of physical interactions between genomic regions by enChIP‐Seq (2017) (27)
- Exome Analyses of Long QT Syndrome Reveal Candidate Pathogenic Mutations in Calmodulin-Interacting Genes (2015) (27)
- Nucleotide composition-linked divergence of vertebrate core promoter architecture. (2011) (27)
- Differential Binding of Three Major Human ADAR Isoforms to Coding and Long Non-Coding Transcripts (2017) (27)
- Full-malaria 2004: an enlarged database for comparative studies of full-length cDNAs of malaria parasites, Plasmodium species (2004) (27)
- Stabilities and activities of the N‐ and C‐domains of FKBP22 from a psychrotrophic bacterium overproduced in Escherichia coli (2005) (27)
- Expressed sequence tags from cynomolgus monkey (Macaca fascicularis) liver: A systematic identification of drug‐metabolizing enzymes (2008) (27)
- Small open reading frames in 5' untranslated regions of mRnas. (2003) (27)
- Slow-Cycling Cancer Stem Cells Regulate Progression and Chemoresistance in Colon Cancer (2020) (27)
- Gene Cloning, Overproduction, and Characterization of Thermolabile Alkaline Phosphatase from a Psychrotrophic Bacterium (2005) (26)
- Genomic structure and evolution of the mating type locus in the green seaweed Ulva partita (2017) (26)
- Fruit setting rewires central metabolism via gibberellin cascades (2020) (26)
- An integrated genome-wide multi-omics analysis of gene expression dynamics in the preimplantation mouse embryo (2018) (26)
- Substitution rate and structural divergence of 5'UTR evolution: comparative analysis between human and cynomolgus monkey cDNAs. (2005) (26)
- Isolation and chromosomal mapping of a novel human gene showing homology to Na+/PO4 cotransporter (1999) (26)
- Differences in embryo quality are associated with differences in oocyte composition: A proteomic study in inbred mice (2015) (25)
- Flexible selection of diversified Na+/K+-ATPase α-subunit isoforms for osmoregulation in teleosts (2016) (25)
- Dynamic transition of transcription and chromatin landscape during fission yeast adaptation to glucose starvation (2015) (25)
- Transcriptome analysis and identification of regulators for long-term plasticity in Aplysia kurodai (2008) (24)
- Selective control of up-regulated and down-regulated genes by temporal patterns and doses of insulin (2016) (24)
- An innovative diagnostic technology for the codon mutation C580Y in kelch13 of Plasmodium falciparum with MinION nanopore sequencer (2018) (24)
- Directed induction of alveolar type I cells derived from pluripotent stem cells via Wnt signaling inhibition (2020) (24)
- Functional D-box sequences reset the circadian clock and drive mRNA rhythms (2019) (24)
- Dramatic improvement in genome assembly achieved using doubled-haploid genomes (2014) (23)
- A novel zebrafish intestinal tumor model reveals a role for cyp7a1-dependent tumor–liver crosstalk in causing adverse effects on the host (2018) (23)
- NanoPipe—a web server for nanopore MinION sequencing data analysis (2019) (23)
- Bone-protective Functions of Netrin 1 Protein* (2016) (23)
- MAML1 Enhances the Transcriptional Activity of Runx2 and Plays a Role in Bone Development (2013) (23)
- The Exon Junction Complex Controls the Efficient and Faithful Splicing of a Subset of Transcripts Involved in Mitotic Cell-Cycle Progression (2016) (23)
- The First Nationwide Survey and Genetic Analyses of Bardet-Biedl Syndrome in Japan (2015) (22)
- The tRNA Splicing Endonuclease Complex Cleaves the Mitochondria-localized CBP1 mRNA* (2015) (22)
- Identification of long non-coding RNAs in advanced prostate cancer associated with androgen receptor splicing factors (2020) (22)
- H-NS Facilitates Sequence Diversification of Horizontally Transferred DNAs during Their Integration in Host Chromosomes (2016) (22)
- Identification of Arabidopsis genic and non‐genic promoters by paired‐end sequencing of TSS tags (2017) (22)
- Molecular mechanisms underlying active desalination and low water permeability in the esophagus of eels acclimated to seawater. (2017) (22)
- Kmt2b conveys monovalent and bivalent H3K4me3 in mouse spermatogonial stem cells at germline and embryonic promoters (2018) (22)
- Three-step transcriptional priming that drives the commitment of multipotent progenitors toward B cells (2018) (21)
- Identification of two novel primate-specific genes in DSCR. (2002) (21)
- Characterisation of full-length cDNA sequences provides insights into the Eimeria tenellatranscriptome (2012) (21)
- Chronological genome and single-cell transcriptome integration characterizes the evolutionary process of adult T cell leukemia-lymphoma (2021) (21)
- Mortality and risk of progression to adult T cell leukemia/lymphoma in HTLV-1–associated myelopathy/tropical spastic paraparesis (2020) (21)
- Profibrotic function of pulmonary group 2 innate lymphoid cells is controlled by regnase-1 (2020) (21)
- Ovarian Ecdysteroidogenesis in Both Immature and Mature Stages of an Acari, Ornithodoros moubata (2015) (21)
- Characterization of the compact bicistronic microRNA precursor, miR-1/miR-133, expressed specifically in Ciona muscle tissues. (2013) (21)
- Correlation Analysis between Gut Microbiota Alterations and the Cytokine Response in Patients with Coronavirus Disease during Hospitalization (2022) (20)
- Transcriptome profiling reveals infection strategy of an insect maculavirus (2018) (20)
- Molecular evidence for recent divergence of X- and Y-linked gene pairs in Spinacia oleracea L. (2019) (20)
- Large-scale collection and characterization of promoters of human and mouse genes (2004) (20)
- Genome-wide identification of pistil-specific genes expressed during fruit set initiation in tomato (Solanum lycopersicum) (2017) (20)
- Genome-wide characterization of DNA methylation, small RNA expression, and histone H3 lysine nine di-methylation in Brassica rapa L. (2018) (20)
- Deep sequencing of the prothoracic gland transcriptome reveals new players in insect ecdysteroidogenesis (2017) (20)
- Six6 and Six7 coordinately regulate expression of middle-wavelength opsins in zebrafish (2019) (20)
- Hormone-responsive genes in the SHH and WNT/β-catenin signaling pathways influence urethral closure and phallus growth† (2018) (20)
- Genomic profiling reveals heterogeneous populations of ductal carcinoma in situ of the breast (2020) (19)
- RNA sequencing reveals small RNAs differentially expressed between incipient Japanese threespine sticklebacks (2013) (19)
- Genome-Wide Analysis of the Chromatin Composition of Histone H2A and H3 Variants in Mouse Embryonic Stem Cells (2014) (19)
- Decreased KPNB1 Expression is Induced by PLK1 Inhibition and Leads to Apoptosis in Lung Adenocarcinoma (2017) (19)
- Evolutionarily conserved autoregulation of alternative pre-mRNA splicing by ribosomal protein L10a (2016) (19)
- Global gene expression analysis of gill tissues from normal and thermally selected strains of rainbow trout (2012) (19)
- Gene structure, dual-promoters and mRNA alternative splicing of the human and mouse regulator of G protein signaling GAIP/RGS19. (2003) (19)
- PSF Promotes ER-Positive Breast Cancer Progression via Posttranscriptional Regulation of ESR1 and SCFD2 (2020) (19)
- Regulation of ectopic heterochromatin-mediated epigenetic diversification by the JmjC family protein Epe1 (2019) (19)
- In silico identification of lysocin biosynthetic gene cluster from Lysobacter sp. RH2180-5 (2016) (18)
- Isolation, tissue expression, and chromosomal assignment of a novel human gene which encodes a protein with RING finger motif (1998) (18)
- Integrative Genomic Analysis of OCT1 Reveals Coordinated Regulation of Androgen Receptor in Advanced Prostate Cancer. (2019) (18)
- Genome-wide analysis of long noncoding RNA turnover. (2015) (18)
- Spatial Interplay between Polycomb and Trithorax Complexes Controls Transcriptional Activity in T Lymphocytes (2015) (18)
- Molecular insights into the non-recombining nature of the spinach male-determining region (2018) (18)
- A Novel Spiro-Heterocyclic Compound Identified by the Silkworm Infection Model Inhibits Transcription in Staphylococcus aureus (2017) (18)
- Comprehensive single-cell transcriptome analysis reveals heterogeneity in endometrioid adenocarcinoma tissues (2017) (18)
- Identification of Minimal p53 Promoter Region Regulated by MALAT1 in Human Lung Adenocarcinoma Cells (2018) (18)
- Comprehensive gene expression analysis of 5'-end of mRNA identified novel intronic transcripts associated with hepatocellular carcinoma. (2010) (18)
- Non-invasive diagnosis of cutaneous leishmaniasis by the direct boil loop-mediated isothermal amplification method and MinION™ nanopore sequencing. (2018) (18)
- Full-Malaria/Parasites and Full-Arthropods: databases of full-length cDNAs of parasites and arthropods, update 2009 (2008) (17)
- From the laboratory to the field: assaying histone methylation at FLOWERING LOCUS C in naturally growing Arabidopsis halleri. (2016) (17)
- Ultraconserved cDNA segments in the human transcriptome exhibit resistance to folding and implicate function in translation and alternative splicing (2010) (17)
- Construction of mate pair full-length cDNAs libraries and characterization of transcriptional start sites and termination sites (2014) (17)
- Analysis of Müller glia specific genes and their histone modification using Hes1-promoter driven EGFP expressing mouse (2017) (17)
- Pulmonary Regnase-1 orchestrates the interplay of epithelium and adaptive immune systems to protect against pneumonia (2018) (17)
- Unique Gut Microbiome in HIV Patients on Antiretroviral Therapy (ART) Suggests Association with Chronic Inflammation (2021) (17)
- Expression of miR-26a exhibits a negative correlation with HMGA1 and regulates cancer progression by targeting HMGA1 in lung adenocarcinoma cells (2016) (17)
- Ezh 2 augments leukemogenicity by reinforcing differentiation blockage in acute myeloid leukemia (2012) (17)
- TRIM32 modulates pluripotency entry and exit by directly regulating Oct4 stability (2015) (17)
- SAGE analysis of early oogenesis in the silkworm, Bombyx mori. (2007) (17)
- Detection of gene expression in synovium of patients with osteoarthritis using a random sequencing method (2007) (17)
- Construction and analysis of full-length cDNA library of Cryptosporidium parvum. (2011) (17)
- Transcriptome and Histopathological Changes in Mouse Brain Infected with Neospora caninum (2015) (17)
- Long-read sequencing for non-small-cell lung cancer genomes (2020) (17)
- A single m6A modification in U6 snRNA diversifies exon sequence at the 5’ splice site (2021) (16)
- High-Resolution Characterization of Toxoplasma gondii Transcriptome with a Massive Parallel Sequencing Method† (2010) (16)
- Combinatory use of distinct single-cell RNA-seq analytical platforms reveals the heterogeneous transcriptome response (2018) (16)
- Centaurin-alpha1 is a phosphatidylinositol 3-kinase-dependent activator of ERK1/2 mitogen-activated protein kinases. (2006) (16)
- Neuroblastoma oligo-capping cDNA project: toward the understanding of the genesis and biology of neuroblastoma. (2003) (16)
- Binding analysis of a psychrotrophic FKBP22 to a folding intermediate of protein using surface plasmon resonance (2005) (16)
- Different gene expression profiles between normal and thermally selected strains of rainbow trout, Oncorhynchus mykiss, as revealed by comprehensive transcriptome analysis. (2016) (16)
- The histone modification H3 lysine 27 tri-methylation has conserved gene regulatory roles in the triplicated genome of Brassica rapa L. (2019) (16)
- Regnase-1-mediated post-transcriptional regulation is essential for hematopoietic stem and progenitor cell homeostasis (2019) (16)
- Field diagnosis and genotyping of chikungunya virus using a dried reverse transcription loop-mediated isothermal amplification (LAMP) assay and MinION sequencing (2019) (15)
- RNA sequencing: from sample preparation to analysis. (2014) (15)
- On-Site MinION Sequencing. (2019) (15)
- Association of colitis with gut-microbiota dysbiosis in clathrin adapter AP-1B knockout mice (2020) (15)
- Indoleamine 2,3-dioxygenase 1 is highly expressed in glioma stem cells. (2020) (15)
- A Single Pheromone Receptor Gene Conserved across 400 My of Vertebrate Evolution (2018) (15)
- Full-parasites: database of full-length cDNAs of apicomplexa parasites, 2010 update (2010) (15)
- Multiomics identifies the link between intratumor steatosis and the exhausted tumor immune microenvironment in hepatocellular carcinoma (2022) (15)
- Profiling ascidian promoters as the primordial type of vertebrate promoter (2011) (15)
- Gene expression analysis of human hepatocellular carcinoma by using full-length cDNA library. (2006) (15)
- The Number of Transcription Factors at an Enhancer Determines Switch-like Gene Expression. (2020) (15)
- A systematic sequencing-based approach for microbial contaminant detection and functional inference (2019) (15)
- A novel start codon mutation of the MERTK gene in a patient with retinitis pigmentosa (2016) (15)
- Prediction of unidentified human genes on the basis of sequence similarity to novel cDNAs from cynomolgus monkey brain (2001) (15)
- Bm-muted, orthologous to mouse muted and encoding a subunit of the BLOC-1 complex, is responsible for the otm translucent mutation of the silkworm Bombyx mori. (2017) (14)
- A novel human gene whose product shares significant homology with the bovine brain-specific protein p25 on chromosome 5p15.3 (1999) (14)
- MoMI-G: modular multi-scale integrated genome graph browser (2019) (14)
- Comparative Analysis of Patient-Matched PDOs Revealed a Reduction in OLFM4-Associated Clusters in Metastatic Lesions in Colorectal Cancer (2021) (14)
- Identification of DNA methylated regions by using methylated DNA immunoprecipitation sequencing in Brassica rapa (2018) (14)
- Long-read whole-genome methylation patterning using enzymatic base conversion and nanopore sequencing (2021) (14)
- Cost-Effective Sequencing of Full-Length cDNA Clones Powered by a De Novo-Reference Hybrid Assembly (2010) (14)
- Metabolic labeling of RNA using multiple ribonucleoside analogs enables the simultaneous evaluation of RNA synthesis and degradation rates (2020) (14)
- Waves of chromatin modifications in mouse dendritic cells in response to LPS stimulation (2016) (14)
- EXOSC9 depletion attenuates P-body formation, stress resistance, and tumorigenicity of cancer cells (2020) (14)
- 5'-Bromouridine IP Chase (BRIC)-Seq to Determine RNA Half-Lives. (2018) (14)
- Chloroplast acquisition without the gene transfer in kleptoplastic sea slugs, Plakobranchus ocellatus (2020) (13)
- Database and analysis system for cDNA clones obtained from full-length enriched cDNA libraries (2001) (13)
- Efficient prediction of a spatial transcriptomics profile better characterizes breast cancer tissue sections without costly experimentation (2021) (13)
- Environmental adaptation of Acanthamoeba castellanii and Entamoeba histolytica at genome level as seen by comparative genomic analysis (2018) (13)
- A Human Transcriptome (2004) (13)
- A missense mutation in solute carrier family 12, member 1 (SLC12A1) causes hydrallantois in Japanese Black cattle (2016) (13)
- Selective Induction of Human Autonomic Neurons Enables Precise Control of Cardiomyocyte Beating (2020) (13)
- A Comparison of the Rest Complex Binding Patterns in Embryonic Stem Cells and Epiblast Stem Cells (2014) (13)
- p53 Is a Host Cell Regulator during Herpes Simplex Encephalitis (2016) (13)
- Potentiality of multiple modalities for single-cell analyses to evaluate the tumor microenvironment in clinical specimens (2021) (13)
- The 5' terminal oligopyrimidine tract of human elongation factor 1A-1 gene functions as a transcriptional initiator and produces a variable number of Us at the transcriptional level. (2003) (13)
- The role of Mediator and Little Elongation Complex in transcription termination (2020) (13)
- m6A‐mediated alternative splicing coupled with nonsense‐mediated mRNA decay regulates SAM synthetase homeostasis (2021) (13)
- Genome-wide map of RNA degradation kinetics patterns in dendritic cells after LPS stimulation facilitates identification of primary sequence and secondary structure motifs in mRNAs (2016) (13)
- Whole Exome Sequencing in Eight Thai Patients With Leber Congenital Amaurosis Reveals Mutations in the CTNNA1 and CYP4V2 Genes. (2017) (13)
- Cloning, expression analysis, and chromosomal localization of a novel butyrophilin-like receptor (1999) (12)
- Subtype-specific collaborative transcription factor networks are promoted by OCT4 in the progression of prostate cancer (2021) (12)
- Multiregion Genomic Analysis of Serially Transplanted Patient-derived Xenograft Tumors (2018) (12)
- Bombyx mori nucleopolyhedrovirus actin rearrangement-inducing factor 1 enhances systemic infection in B. mori larvae. (2015) (12)
- Collection of Macaca fascicularis cDNAs derived from bone marrow, kidney, liver, pancreas, spleen, and thymus (2009) (12)
- Functional D-box sequences reset the circadian clock and drive mRNA rhythms (2019) (12)
- Single nucleotide polymorphisms in genes encoding penicillin-binding proteins in β-lactamase-negative ampicillin-resistant Haemophilus influenzae in Japan (2018) (12)
- Characterization of cancer omics and drug perturbations in panels of lung cancer cells (2019) (12)
- Long non-coding RNA exchange during the oocyte-to-embryo transition in mice (2017) (12)
- Silkworm HP1a transcriptionally enhances highly expressed euchromatic genes via association with their transcription start sites (2014) (12)
- Locus-specific ChIP combined with NGS analysis reveals genomic regulatory regions that physically interact with the Pax5 promoter in a chicken B cell line (2016) (12)
- Novel Nucleoside Diphosphatase Contributes to Staphylococcus aureus Virulence*♦ (2016) (12)
- Single mutation makes Escherichia coli an insect mutualist (2022) (12)
- A sodium binding system alleviates acute salt stress during seawater acclimation in eels (2017) (11)
- Transomics analysis reveals allosteric and gene regulation axes for altered hepatic glucose-responsive metabolism in obesity (2020) (11)
- Genome-wide identification and characterization of transcription start sites and promoters in the tunicate Ciona intestinalis (2016) (11)
- Ultrahigh-Density Linkage Map Construction Using Low-Coverage Whole-Genome Sequencing of a Doubled Haploid Population: Case Study of Torafugu (Takifugu rubripes) (2018) (11)
- Altered expression of testis-specific genes, piRNAs, and transposons in the silkworm ovary masculinized by a W chromosome mutation (2012) (11)
- A patient infected with SARS-CoV-2 over 100 days (2020) (11)
- dbQSNP: A database of SNPs in human promoter regions with allele frequency information determined by single‐strand conformation polymorphism‐based methods (2005) (11)
- Trans-omic Analysis Reveals ROS-Dependent Pentose Phosphate Pathway Activation after High-Frequency Electrical Stimulation in C2C12 Myotubes (2020) (11)
- Self-Contained Induction of Neurons from Human Embryonic Stem Cells (2009) (11)
- Single-cell and spatial analyses of cancer cells: toward elucidating the molecular mechanisms of clonal evolution and drug resistance acquisition (2021) (11)
- Analysis of changes in transcription start site distribution by a classification approach. (2014) (11)
- Necessity of p53-binding to the CDH1 locus for its expression defines two epithelial cell types differing in their integrity (2018) (11)
- Antitumor effects of ribavirin in combination with TMZ and IFN-β in malignant glioma cells (2020) (11)
- Comprehensive analysis of mutually exclusive alternative splicing in C. elegans (2014) (11)
- Draft Genome Sequence of Weissella oryzae SG25T, Isolated from Fermented Rice Grains (2014) (10)
- Extremely slow rate of evolution in the HOX cluster revealed by comparison between Tanzanian and Indonesian coelacanths. (2012) (10)
- Blood and lymphatic systems are segregated by the FLCN tumor suppressor (2020) (10)
- Characteristics of nucleosomes and linker DNA regions on the genome of the basidiomycete Mixia osmundae revealed by mono- and dinucleosome mapping (2012) (10)
- Transcriptome analyses of human genes and applications for proteome analyses. (2006) (10)
- Functional divergence of duplicate genes several million years after gene duplication in Arabidopsis (2018) (10)
- Cell cycle arrest determines adult neural stem cell ontogeny by an embryonic Notch-nonoscillatory Hey1 module (2021) (10)
- Abstracts from the 8th International Conference on cGMP Generators, Effectors and Therapeutic Implications (2017) (10)
- Giardia lamblia Transcriptome Analysis Using TSS-Seq and RNA-Seq (2013) (10)
- Maternal variant in the upstream of FOXP3 gene on the X chromosome is associated with recurrent infertility in Japanese Black cattle (2017) (10)
- Long read sequencing reveals a novel class of structural aberrations in cancers: identification and characterization of cancerous local amplifications (2019) (10)
- Base-pairing probability in the microRNA stem region affects the binding and editing specificity of human A-to-I editing enzymes ADAR1-p110 and ADAR2 (2018) (10)
- Serial mutational tracking in surgically resected locally advanced colorectal cancer with neoadjuvant chemotherapy (2018) (9)
- Trans-omic analysis reveals obesity-associated dysregulation of inter-organ metabolic cycles between the liver and skeletal muscle (2021) (9)
- Identification of differentially expressed mRNAs during neuronal differentiation of P19 embryonal carcinoma cells (1995) (9)
- Glycoprotein nonmetastatic melanoma protein B regulates lysosomal integrity and lifespan of senescent cells (2022) (9)
- A case of Bardet-Biedl syndrome complicated with intracranial hypertension in a Japanese child (2014) (9)
- RAB5A and TRAPPC6B are novel targets for Shiga toxin 2a inactivation in kidney epithelial cells (2020) (9)
- Computation of Rank and Select Functions on Hierarchical Binary String and Its Application to Genome Mapping Problems for Short-Read DNA Sequences (2009) (9)
- Sexually biased transcripts at early embryonic stages of the silkworm depend on the sex chromosome constitution. (2015) (9)
- A genome database for a Japanese population of the larvacean Oikopleura dioica (2020) (9)
- Transcriptional profiling of Toll-like receptor 2-deficient primary murine brain cells during Toxoplasma gondii infection (2017) (9)
- 7SK small nuclear ribonucleoprotein complex is recruited to the HIV‐1 promoter via short viral transcripts (2014) (9)
- Major chimpanzee-specific structural changes in sperm development-associated genes (2011) (8)
- Establishment of a mouse-tick infection model for Theileria orientalis and analysis of its transcriptome. (2018) (8)
- Importance of lymph node immune responses in MSI-H/dMMR colorectal cancer (2021) (8)
- Whole-Genome Sequencing of 84 Japanese Eels Reveals Evidence against Panmixia and Support for Sympatric Speciation (2018) (8)
- Foxr2 promotes formation of CNS-embryonal tumors in a Trp53-deficient background. (2019) (8)
- Predicting promoter activities of primary human DNA sequences (2011) (8)
- Effects of androgen and oestrogen on the IGF pathways controlling phallus growth. (2018) (8)
- The emerging picture of the mitochondrial protein import complexes of Amoebozoa supergroup (2017) (8)
- The Babesia bovis gene and promoter model: an update from full-length EST analysis (2014) (8)
- Corrigendum to: “Assignment of 118 novel cDNAs of cynomolgus monkey brain to human chromosomes” [Gene 275 (2001) 31–37] (2001) (8)
- Identification of a genomic enhancer that enforces proper apoptosis induction in thymic negative selection (2019) (8)
- Artificial “ping-pong” cascade of PIWI-interacting RNA in silkworm cells (2017) (8)
- Molecular cloning and characterization of a gene expressed in mouse developing tongue, mDscr5 gene, a homolog of human DSCR5 (Down syndrome Critical Region gene 5) (2001) (8)
- Characterization of a novel chromodomain-containing gene from the silkworm, Bombyx mori. (2013) (8)
- Japanese genome‐wide association study identifies a significant colorectal cancer susceptibility locus at chromosome 10p14 (2017) (8)
- The genome sequence of Samia ricini, a new model species of lepidopteran insect (2020) (8)
- MCM10 compensates for Myc‐induced DNA replication stress in breast cancer stem‐like cells (2020) (8)
- Genome-Wide Maps of Mononucleosomes and Dinucleosomes Containing Hyperacetylated Histones of Aspergillus fumigatus (2010) (8)
- E74-Like Factor 3 Is a Key Regulator of Epithelial Integrity and Immune Response Genes in Biliary Tract Cancer (2020) (8)
- Masc‐induced dosage compensation in silkworm cultured cells (2019) (8)
- Assessment of homozygosity levels in the mito-gynogenetic torafugu (Takifugu rubripes) by genome-wide SNP analyses (2013) (8)
- Remote solid cancers rewire hepatic nitrogen metabolism via host nicotinamide-N-methyltransferase (2022) (7)
- Advent of a new sequencing era: long-read and on-site sequencing (2020) (7)
- High-Quality Overlapping Paired-End Reads for the Detection of A-to-I Editing on Small RNA. (2018) (7)
- A de novo mutation of the MYH7 gene in a large Chinese family with autosomal dominant myopathy (2014) (7)
- A GWAS approach to find SNPs associated with salt removal in rice leaf sheath. (2020) (7)
- Impaired tumor immune response in metastatic tumors is a selective pressure for neutral evolution in CRC cases (2021) (7)
- Clonal germinal center B cells function as a niche for T-cell lymphoma. (2022) (7)
- Large DNA virus promoted the endosymbiotic evolution to make a photosynthetic eukaryote (2019) (7)
- Multiomics Investigation Revealing the Characteristics of HIV-1-Infected Cells In Vivo. (2020) (7)
- Protein import complexes in the mitochondrial outer membrane of Amoebozoa representatives (2016) (7)
- MoMI-G: modular multi-scale integrated genome graph browser (2019) (7)
- Identification of potential regulatory mutations using multi-omics analysis and haplotyping of lung adenocarcinoma cell lines (2018) (6)
- The Evolving Genomic Landscape of Esophageal Squamous Cell Carcinoma Under Chemoradiotherapy (2021) (6)
- Construction and Preliminary Characterization of Full length Enriched cDNA Libraries for Nonhuman Primates (2000) (6)
- Networking and Specificity-Changing DNA Methyltransferases in Helicobacter pylori (2020) (6)
- Histopathological factors affecting the extraction of high quality genomic DNA from tissue sections for next-generation sequencing. (2019) (6)
- Characterization of the mitochondrial genome of Rousettus leschenaulti (2014) (6)
- TSS seq based core promoter architecture in blood feeding Tsetse fly (Glossina morsitans morsitans) vector of Trypanosomiasis (2015) (6)
- A spinach genome assembly with remarkable completeness, and its use for rapid identification of candidate genes for agronomic traits (2021) (6)
- Lack of whey acidic protein (WAP) four-disulfide core domain protease inhibitor 2 (WFDC2) causes neonatal death from respiratory failure in mice (2019) (6)
- Metacytofilin is a potent therapeutic drug candidate for toxoplasmosis. (2019) (6)
- Candidate gene identification of ovulation-inducing genes by RNA sequencing with an in vivo assay in zebrafish (2018) (6)
- Correction: A Genome Scan for Genes Underlying Microgeographic-Scale Local Adaptation in a Wild Arabidopsis Species (2015) (6)
- Restriction glycosylases: involvement of endonuclease activities in the restriction process (2016) (6)
- Emergence and Evolution of ERM Proteins and Merlin in Metazoans (2019) (6)
- Comparative genomic analyses illuminate the distinct evolution of megabats within Chiroptera (2020) (5)
- Genetic polymorphisms in Plasmodium falciparum chloroquine resistance genes, pfcrt and pfmdr1, in North Sulawesi, Indonesia (2017) (5)
- Phasing analysis of lung cancer genomes using a long read sequencer (2022) (5)
- OverGeneDB: a database of 5′ end protein coding overlapping genes in human and mouse genomes (2017) (5)
- Positive selective sweeps of epigenetic mutations regulating specialized metabolites in plants (2021) (5)
- Transcriptome analysis of the effect of C-C chemokine receptor 5 deficiency on cell response to Toxoplasma gondii in brain cells (2019) (5)
- Pivotal roles of Fezf2 in differentiation of cone OFF bipolar cells and functional maturation of cone ON bipolar cells in retina (2018) (5)
- International society for gastrointestinal hereditary tumours—InSiGHT (2015) (5)
- Characterization of Transcription Start Sites of Putative Non-coding RNAs by Multifaceted Use of Massively Paralleled Sequencer (2010) (5)
- The potential role of Arhgef33 RhoGEF in foveal development in the zebra finch retina (2020) (5)
- Correction: Integrated Multiregional Analysis Proposing a New Model of Colorectal Cancer Evolution (2017) (5)
- Artificially designed hybrids facilitate efficient generation of high-resolution linkage maps (2018) (5)
- DBTSS: DataBase of Human Transcriptional Start Sites and Full-Length cDNA (2001) (5)
- Intrinsic Promoter Activities of Primary DNA Sequences in the Human Genome (2007) (5)
- Base composition and nucleosome density in exonic and intronic regions in genes of the filamentous ascomycetes Aspergillus nidulans and Aspergillus oryzae. (2013) (5)
- Single Molecule and Single Cell Sequencing (2019) (5)
- Comparative analysis of transcriptomes in aerial stems and roots of Ephedra sinica based on high-throughput mRNA sequencing (2016) (5)
- Cross-validated methods for promoter/transcription start site mapping in SL trans-spliced genes, established using the Ciona intestinalis troponin I gene (2010) (5)
- Genome assembly and annotation of the California harvester ant Pogonomyrmex californicus (2020) (4)
- Direct Reprogramming Improves Cardiac Function and Reverses Fibrosis in Chronic Myocardial Infarction (2022) (4)
- Characterization of Histone H3 Lysine 4 and 36 Tri-methylation in Brassica rapa L. (2021) (4)
- Bardet–Biedl syndrome and related disorders in Japan (2020) (4)
- Runx2 regulates chromatin accessibility to direct the osteoblast program at neonatal stages (2022) (4)
- Development of a time-series shotgun metagenomics database for monitoring microbial communities at the Pacific coast of Japan (2021) (4)
- DB-AT: a 2015 update to the Full-parasites database brings a multitude of new transcriptomic data for apicomplexan parasites (2014) (4)
- Different murine-derived feeder cells alter the definitive endoderm differentiation of human induced pluripotent stem cells (2018) (4)
- Jiadifenolide induces the expression of cellular communication network factor (CCN) genes, and CCN2 exhibits neurotrophic activity in neuronal precursor cells derived from human induced pluripotent stem cells. (2019) (4)
- Essential role of the Crk family-dosage in DiGeorge-like anomaly and metabolic homeostasis (2020) (4)
- Maintenance of neural stem‐progenitor cells by the lysosomal biosynthesis regulators TFEB and TFE3 in the embryonic mouse telencephalon (2021) (4)
- Whole-genome sequencing and comparative transcriptome analysis of Bombyx mori nucleopolyhedrovirus La strain (2020) (4)
- Identification of deleterious recessive haplotypes and candidate deleterious recessive mutations in Japanese Black cattle (2021) (4)
- Sequence analysis, gene expression, and chromosomal assignment of mouse Borg4 gene and its human orthologue (2000) (4)
- Dynamics of enhancers in myeloid antigen presenting cells upon LPS stimulation (2014) (4)
- Spatial and temporal preferences for trans-splicing in Ciona intestinalis revealed by EST-based gene expression analysis. (2009) (4)
- Staphylococcus aureus utilizes environmental RNA as a building material in specific polysaccharide-dependent biofilms (2022) (3)
- Abstract LB-206: A bromodomain-swap allele demonstrates that on-target chemical inhibition of BRD9 limits the proliferation of acute myeloid leukemia cells (2016) (3)
- A Novel Diagnostic Method for Malaria Using Loop Mediated Isothermal Amplification (LAMP) and MinION Nanopore Sequencer (2017) (3)
- Potential for small RNA production against Bombyx mori latent virus in Bombyx mori ovaries. (2020) (3)
- RSPO2 defines a distinct undifferentiated progenitor in the tendon/ligament and suppresses ectopic ossification (2022) (3)
- Waves of chromatin modifications in mouse dendritic cells in response to LPS stimulation (2018) (3)
- Transcript Identification Through Long-Read Sequencing. (2021) (3)
- Genome-wide maps of nucleosomes of the trichostatin A treated and untreated archiascomycetous yeast Saitoella complicata (2016) (3)
- Dengue transmission model by means of viremic adult immuno-competent mouse (2014) (3)
- Abstract 5119: Frequent splicing pathway mutations and aberrant RNA splicing in myelodysplasia (2012) (3)
- Profiling molecular factors associated with pyknosis and developmental arrest induced by an opioid receptor antagonist and dihydroartemisinin in Plasmodium falciparum (2017) (3)
- Monitoring endoplasmic reticulum stress responsive mRNAs by RNA sequencing. (2012) (3)
- A functional RNA structure in the influenza A virus ribonucleoprotein complex for segment bundling (2020) (3)
- An Informative Approach to Single-Cell Sequencing Analysis. (2019) (3)
- Repeated inversions within a pannier intron drive diversification of intraspecific colour patterns of ladybird beetles (2018) (3)
- Targeting Epigenetic and Posttranscriptional Gene Regulation by PSF Impairs Hormone Therapy–Refractory Cancer Growth (2021) (3)
- A divergent RWP-RK transcription factor determines mating type in heterothallic Closterium. (2022) (3)
- Characterization of gene expression in mouse embryos at the 1-cell stage (2015) (3)
- Amoebozoa Possess Lineage-Specific Globin Gene Repertoires Gained by Individual Horizontal Gene Transfers (2014) (3)
- Dengue fever as a reemerging disease in upper Egypt: Diagnosis, vector surveillance and genetic diversity using RT-LAMP assay (2022) (3)
- Japanese WDR45 de novo mutation diagnosed by exome analysis: A case report (2017) (3)
- Transcriptome change of Staphylococcus aureus in infected mouse liver (2022) (3)
- Associations between nucleosome phasing, sequence asymmetry, and tissue-specific expression in a set of inbred Medaka species (2015) (3)
- IκBα is required for full transcriptional induction of some NFκB-regulated genes in response to TNF in MCF-7 cells (2021) (3)
- DOCK11 and DENND2A play pivotal roles in the maintenance of hepatitis B virus in host cells (2021) (3)
- Detection of Klebsiella pneumoniae human gut carriage: a comparison of culture, qPCR, and whole metagenomic sequencing methods (2022) (3)
- Interleukin-6 sensitizes TNF-α and TRAIL/Apo2L dependent cell death through upregulation of death receptors in human cancer cells. (2021) (3)
- Runx2 Regulates Chromatin Accessibility to Direct Skeletal Cell Programs (2021) (2)
- Oligo-capped cDNAs for promoter identification and annotation (2002) (2)
- Translational research of VOLTAGE-A: Efficacy predictors of preoperative chemoradiotherapy and consolidation nivolumab in patients with both microsatellite stable and microsatellite instability-high locally advanced rectal cancer. (2021) (2)
- MCM10 compensates for Myc-induced DNA replication stress in breast cancer stem-like cells (2020) (2)
- No novel, high penetrant gene might remain to be found in Japanese patients with unknown MODY (2018) (2)
- Comparative Analysis of Genome and Epigenome in Closely Related Medaka Species Identifies Conserved Sequence Preferences for DNA Hypomethylated Domains (2016) (2)
- Identification of novel heat shock-induced long noncoding RNA in human cells. (2020) (2)
- Predictive markers based on transcriptome modules for vinorelbine-based adjuvant chemotherapy for lung adenocarcinoma patients. (2021) (2)
- Translational research of voltage-A1: Efficacy predictors of preoperative chemoradiotherapy and subsequent nivolumab monotherapy in patients with microsatellite-stable locally advanced rectal cancer. (2020) (2)
- Genetic polymorphisms in Plasmodium falciparum chloroquine resistance genes, pfcrt and pfmdr1, in North Sulawesi, Indonesia (2017) (2)
- Expression profiling of sexually dimorphic genes in the Japanese quail, Coturnix japonica (2020) (2)
- Setd1a Plays Pivotal Roles for the Survival and Proliferation of Retinal Progenitors via Histone Modifications of Uhrf1 (2021) (2)
- Transcriptome analysis reveals a role for the endothelial ANP-GC-A signaling in interfering with pre-metastatic niche formation by solid cancers. (2017) (2)
- Correction: RNA-sequencing-based transcriptome and biochemical analyses of steroidal saponin pathway in a complete set of Allium fistulosum—A. cepa monosomic addition lines (2018) (2)
- AB005. Genomics on site of detection of malaria (2015) (2)
- The proteome, not the transcriptome, predicts that oocyte superovulation affects embryonic phenotypes in mice (2021) (2)
- OCT1-target neural gene PFN2 promotes tumor growth in androgen receptor-negative prostate cancer (2022) (2)
- Involvement of the Linker Histone H1Foo in the Regulation of Oogenesis. (2022) (2)
- Age-associated different transcriptome profiling in zebrafish and rat: insight into diversity of vertebrate aging (2018) (2)
- Spatial and single-cell transcriptome analysis reveals changes in gene expression in response to drug perturbation in rat kidney (2022) (2)
- Unraveling unique features of plasma cell clones in POEMS syndrome with single-cell analysis (2022) (2)
- The N6-methyladenosine methyltransferase METTL16 enables erythropoiesis through safeguarding genome integrity (2022) (1)
- RNA sequencing reveals small RNAs differentially expressed between incipient Japanese threespine sticklebacks (2013) (1)
- Functional Analysis of SRSF2 Mutations in Myelodysplastic Syndromes and Related Disorders (2011) (1)
- Single-cell RNA sequencing unravels heterogeneity of skeletal progenitors and cell–cell interactions underlying the bone repair process (2022) (1)
- Gut microbiota alternation under the intestinal epithelium-specific knockout of mouse Piga gene (2022) (1)
- The genome-wide identification of promoter regions in Toxoplasma gondii. (2015) (1)
- Dengue transmission model by means of viremic adult immuno-competent mouse (2014) (1)
- Monoallelic, antisense and total RNA transcription in an in vitro neural differentiation system based on F1 hybrid mice (2019) (1)
- A 44-kb deleted-type copy number variation is associated with decreasing complement component activity and calf mortality in Japanese Black cattle (2021) (1)
- Tsga8 is required for spermatid morphogenesis and male fertility in mice. (2021) (1)
- Systematic Analysis of Targets of Pumilio (PUM)-Mediated mRNA Decay Identifies a Role of PUM1 in Regulating DNA Damage Response Pathway (2018) (1)
- Shotgun metagenomic sequencing revealed the prebiotic potential of a grain-based diet in mice (2022) (1)
- Author Correction: IκBα is required for full transcriptional induction of some NFκB-regulated genes in response to TNF in MCF-7 cells (2022) (1)
- Genomic profiling reveals heterogeneous populations of ductal carcinoma in situ of the breast (2021) (1)
- Single-Cell DNA-Seq and RNA-Seq in Cancer Using the C1 System. (2019) (1)
- The mitochondrial inner membrane and the intermembrane space protein import complexes of the Amoebozoa representatives differ in subunit numbers and their isoforms (2016) (1)
- Long-read shotgun metagenome sequencing using PromethION uncovers novel bacteriophages, their abundance, and interaction with host bacterial immunity in the oral microbiota (2020) (1)
- Spatial and single-cell transcriptomics decipher the cellular environment containing HLA-G+ cancer cells and SPP1+ macrophages in colorectal cancer. (2023) (1)
- Aberrant splicing isoforms detected by full-length transcriptome sequencing as transcripts of potential neoantigens in non-small cell lung cancer (2021) (1)
- Characterization of Aldosterone-producing Cell Cluster (APCC) at Single-cell Resolution (2022) (1)
- Cyclin J–CDK complexes limit innate immune responses by reducing proinflammatory changes in macrophage metabolism (2022) (1)
- Abstract 5201: MicroRNA 760 regulates gastric cancer progression by downregulation of histone mRNA expression (2014) (1)
- Linear regression models predicting strength of transcriptional activity of promoters. (2011) (1)
- Gene expression signatures as candidate biomarkers of response to PD-1 blockade in non-small cell lung cancers (2021) (1)
- A combination approach of pseudotime analysis and mathematical modeling for understanding drug-resistant mechanisms (2021) (1)
- Murine breast cancers disorganize the liver transcriptome in a zonated manner (2022) (1)
- A novel zebrafish intestinal tumor model reveals a role for cyp7a1-dependent tumor-liver crosstalk in tumor's adverse effects on host (2017) (1)
- Targeted deletion of miRNAs and cis-regulatory modules associated with cone opsin genes in medaka (2017) (1)
- Characterisation of full-length cDNA sequences provides insights into the Eimeria tenella transcriptome (2012) (1)
- Intensive single-cell analysis reveals immune-cell diversity among healthy individuals (2021) (1)
- Fluorescence-Activated Cell Sorting and Gene Expression Profiling of GFP-Positive Cells from Transgenic Zebrafish Lines. (2016) (1)
- Global research alliance in infectious disease: a collaborative effort to combat infectious diseases through dissemination of portable sequencing (2022) (1)
- CRISPR/Cas9-mediated mutagenesis of Ago2 and Siwi in silkworm cultured cells. (2020) (1)
- Altered expression of testis-specific genes, piRNAs, and transposons in the silkworm ovary masculinized by a W chromosome mutation (2012) (1)
- Characterization of One-Pass and Full-Length Sequences of Oligo-Capping cDNA Clones by Genome Mapping (2003) (1)
- Corrigendum: Interactive transcriptome analysis of malaria patients and infecting Plasmodium falciparum. (2018) (1)
- Identification of TIGIT as an HBZ-induced gene by genome-wide analyses: its association with evasion of host defense (2015) (1)
- Amplification-free whole-genome shotgun bisulfite sequencing of mouse primordial germ cells (2013) (1)
- The Babesia bovis gene and promoter model: an update from full-length EST analysis (2014) (1)
- Impact of dietary fructooligosaccharides (FOS) on murine gut microbiota and intestinal IgA secretion (2022) (1)
- GCT-62. DISSECTING INTRATUMORAL HETEROGENEITY OF CENTRAL NERVOUS SYSTEM GERM CELL TUMORS BY SINGLE-CELL RNA-SEQUENCING (2020) (1)
- Discovery of osmotic sensitive transcription factors in fish intestine via a transcriptomic approach (2014) (1)
- Transcriptome analysis reveals a role for the endothelial ANP-GC-A signaling in interfering with pre-metastatic niche formation by solid cancers (2017) (1)
- DDX41 coordinates RNA splicing and transcriptional elongation to prevent DNA replication stress in hematopoietic cells (2022) (1)
- Corrigendum: Networking and Specificity-Changing DNA Methyltransferases in Helicobacter pylori (2020) (1)
- Metabolic labeling of RNA using multiple ribonucleoside analogs enables simultaneous evaluation of transcription and degradation rates (2020) (1)
- Proceedings of the 61th Annual Meeting of Southern Region. (2012) (1)
- DNA methylation and gene expression dynamics during spermatogonial stem cell differentiation in the early postnatal mouse testis (2015) (1)
- Amplification-free whole-genome shotgun bisulfite sequencing of mouse primordial germ cells (2013) (1)
- High-Quality Genome Assembly and Annotation of the California Harvester Ant Pogonomyrmex californicus (Buckley, 1867) (2020) (1)
- Comprehensive in virio structure probing analysis of the influenza A virus identifies a functional RNA structure involved in replication and segment interactions (2020) (1)
- A role for Hmga2 in the early-stage transition of neural stem-progenitor cell properties during mouse neocortical development (2020) (1)
- Masculinizer-induced dosage compensation is achieved by transcriptional downregulation of both copies of Z-linked genes in the silkworm, Bombyx mori (2022) (1)
- In utero gene transfer system for embryos before neural tube closure reveals a role for Hmga2 in the onset of neurogenesis (2020) (1)
- Oppositional poly(A) tail length regulation by FMRP and CPEB1 (2022) (1)
- Genome Wide Analysis Reveals Strong Correlation between CpG Islands and Tissue-Specificity (2003) (1)
- Adrenergic receptor signaling induced by Klf15, a regulator of regeneration enhancer, promotes kidney reconstruction (2022) (1)
- Transcriptome change in Staphylococcus aureus in infecting mice (2021) (1)
- Annotation ESTs : New Resources for Transcription Analysis and Genome Fugu (2003) (0)
- 66 Unexpected Protein Dynamics During the Oocyte-to-Embryo Transition in Mice: a Mass Spectrometry and RNA Sequencing Tandem Study (2018) (0)
- Comprehensive Detection of Terminal Oligo-Pyrimidine (TOP) Genes in Human Genome (2006) (0)
- Subspecies-specific monoallelic expression during neural differentiation (2016) (0)
- A Graph Genome Browser (2017) (0)
- Single-nucleotide substitution determines pollen production in Japanese cedar (2022) (0)
- Maternal variant in the upstream of FOXP3 gene on the X chromosome is associated with recurrent infertility in Japanese Black cattle (2017) (0)
- Title Genome sequence and analysis of the Japanese morning gloryIpomoea nil (2018) (0)
- De novo assembly and inferred functional annotation of the transcriptome of Heterosigma akashiwo (2022) (0)
- Corrigendum: Hsp90 facilitates accurate loading of precursor piRNAs into PIWI proteins. (2015) (0)
- Identification of TIGIT as an HBZ-induced gene by genome-wide analyses: its association with evasion of host defense (2015) (0)
- A sodium binding system alleviates acute salt stress during seawater acclimation in eels (2017) (0)
- Potentiality of multiple modalities for single-cell analyses to evaluate the tumor microenvironment in clinical specimens (2021) (0)
- Genomic structure and evolution of the mating type locus in the green seaweed Ulva partita (2017) (0)
- Phasing of mutations in lung cancer cell lines and expression analysis of multi-organs of single individuals by full-length RNA-Seq using nanopore sequencing (2017) (0)
- Adaptive evolution driven by genome methylation (2016) (0)
- Single-cell and spatial analyses of cancer cells: toward elucidating the molecular mechanisms of clonal evolution and drug resistance acquisition (2021) (0)
- Serotyping dengue virus with isothermal amplification and a portable sequencer (2017) (0)
- Post-transcriptional regulation of RNA abundance under hypoxia (2015) (0)
- Retraction: Transcriptome analysis reveals a role for the endothelial ANP-GC-A signaling in interfering with pre-metastatic niche formation by solid cancers (2022) (0)
- An innovative diagnostic technology for the codon mutation C580Y in kelch13 of Plasmodium falciparum with MinION nanopore sequencer (2018) (0)
- Regulation of MEK inhibitor selumetinib sensitivity by AKT phosphorylation in the novel BRAF L525R mutant (2023) (0)
- A temporal shift of the evolutionary principle shaping intratumor heterogeneity in colorectal cancer (2018) (0)
- Title A Genome Scan for Genes Underlying Microgeographic-ScaleLocal Adaptation in a Wild Arabidopsis Species (2018) (0)
- and Noncanonical E-Boxes of Circadian Rhythms through Canonical (2014) (0)
- Age-Associated Different Transcriptome Profiling in Zebrafish and Rats: an Insight into the Diversity of Vertebrate Aging (2022) (0)
- Long-Read Whole-Genome Sequencing Using a Nanopore Sequencer and Detection of Structural Variants in Cancer Genomes. (2023) (0)
- Novel Preclinical Human Salivary Gland Cancer Models Established Using Organoid Culture And Patient-Derived Xenografting (2021) (0)
- Combinatory use of distinct single-cell RNA-seq analytical platforms reveals the heterogeneous transcriptome response (2018) (0)
- Enhancer landscape dynamics during monocyte and dendritic cell development and the role of the transcription factor IRF8 (2015) (0)
- The histone H3K36 demethylase Fbxl11 plays pivotal roles in the development of retinal late-born cell types. (2023) (0)
- Dynamics of enhancers in myeloid antigen presenting cells upon LPS stimulation (2014) (0)
- Loss-of-function approach using mouse retinal explants showed pivotal roles of Nmnat2 in early and middle stages of retinal development (2022) (0)
- Cell shape‐based chemical screening reveals an epigenetic network mediated by focal adhesions (2021) (0)
- Single-cell analysis of lung adenocarcinoma cell lines reveals diverse expression patterns of individual cells invoked by a molecular target drug treatment (2015) (0)
- Th1/Th2 (WS-015) Chairpersons: Masato Kubo, K. Mark Ansel (2010) (0)
- TUBB3 E410K syndrome with childhood-onset non-alcoholic steatohepatitis. (2021) (0)
- Germinal Center B Cells Derived from TET2-Mutated Clonal Hematopoiesis Provide a Microenviromental Niche for Tumor Cells in Angioimmunoblastic T-Cell Lymphoma (2021) (0)
- Enhancer Landscape Dynamics and the Role of IRF8 in Mononuclear Phagocyte Development (2015) (0)
- Single-cell analytical technologies: uncovering the mechanisms behind variations in immune responses. (2022) (0)
- Role of lncRNA in defining the specificity of stress-mediated gene activation. (2016) (0)
- Molecular insights into the non-recombining nature of the spinach male-determining region (2017) (0)
- Comprehensive single-cell transcriptome analysis reveals heterogeneity in endometrioid adenocarcinoma tissues (2017) (0)
- Subtractive hybridization in the in vitro neuronal differentiation model of embryonal carcinoma cell line P19 (1992) (0)
- Collection and Analysis of Eukaryotic Promoter Regions: DBTSS (DataBase of Transcriptional Start Sites) (2002) (0)
- Trasncriptome analysis of SemibulkCell using FNAB( fine-needle aspiration biopsy (2017) (0)
- Demonstration of neuronal differentiation-related gene expression by gene trapping in embryonal carcinoma cell line P19 (1992) (0)
- Trans-omic analysis reveals allosteric and gene regulation-axes for altered glucose-responsive liver metabolism associated with obesity (2019) (0)
- Abstract C113: Multiple modalities of single cell analyses to evaluate the tumor microenvironment in clinical specimens (2019) (0)
- Abstract 4921: Next-generation sequencing as a potential tool in the diagnostics of APC mosaicism in FAP patient (2015) (0)
- Transcriptional Patterns of High-Risk Human Papillomavirus Types 16, 18, 45, 68b Genes (2020) (0)
- Associations between nucleosome phasing, sequence asymmetry, and tissue-specific expression in a set of inbred Medaka species (2015) (0)
- Global research alliance in infectious disease: a collaborative effort to combat infectious diseases through dissemination of portable sequencing (2022) (0)
- Analysis of Müller glia specific genes and their histone modification using Hes1-promoter driven EGFP expressing mouse (2017) (0)
- TSS seq based core promoter architecture in blood feeding Tsetse fly (Glossina morsitans morsitans) vector of Trypanosomiasis (2015) (0)
- Genome-wide map of RNA degradation kinetics patterns in dendritic cells after LPS stimulation facilitates identification of primary sequence and secondary structure motifs in mRNAs (2016) (0)
- The role of Mediator and Little Elongation Complex in transcription termination (2020) (0)
- The chromatin remodeler RSC prevents ectopic CENP-A propagation into pericentromeric heterochromatin at the chromatin boundary (2022) (0)
- Necessity of p53-binding to the CDH1 locus for its expression defines two epithelial cell types differing in their integrity (2018) (0)
- Protein import complexes in the mitochondrial outer membrane of Amoebozoa representatives (2016) (0)
- The emerging picture of the mitochondrial protein import complexes of Amoebozoa supergroup (2017) (0)
- Detection of phase-dependent transcriptomic changes and Rubisco-mediated CO2 fixation into poly (3-hydroxybutyrate) under heterotrophic condition in Ralstonia eutropha H16 based on RNA-seq and gene deletion analyses (2013) (0)
- Properties of piRNAs derived from an insect maculavirus in silkworm cultured cells. (2017) (0)
- Differing impact of phosphoglycerate mutase 1-deficiency on brown and white adipose tissue (2022) (0)
- Nanopore sequencing of drug-resistance-associated genes in malaria parasites, Plasmodium falciparum (2018) (0)
- IκBα is required for full transcriptional induction of some NFκB-regulated genes in response to TNF in MCF-7 cells (2021) (0)
- High-throughput analysis for mutant promoter using massively parallel sequencer (2016) (0)
- AB043. Nanopore sequencing for genotyping Dengue virus (2015) (0)
- Selective Induction of Human Autonomic Neurons Enables Precise Control of Cardiomyocyte Beating (2020) (0)
- A bifurcation concept for B-lymphoid/plasmacytoid dendritic cells with largely fluctuating transcriptome dynamics. (2022) (0)
- UTX deficiency in neural stem/progenitor cells results in impaired neural development, fetal ventriculomegaly, and postnatal death (2022) (0)
- Whole-genome Methylation Analysis of APOBEC Enzyme-converted DNA (~5 kb) by Nanopore Sequencing. (2022) (0)
- Ezh2 Is Required for Developmental Stage-Specific Silencing of Oncofetal Genes in Hematopoietic Stem/Progenitor Cells (2014) (0)
- A systematic sequencing-based approach for microbial contaminant detection and functional inference (2019) (0)
- Semibulk RNA-seq analysis as a convenient method for measuring gene expression statuses in a local cellular environment (2022) (0)
- Unveiling Highly Fluctuating Single-Cell Transcriptome Dynamics at a Novel Bifurcation Point in a Human Lymphoid Pathway (2022) (0)
- Portable sequencer MinION to detect Plasmodium falciparum multidrug resistance (2016) (0)
- Regnase-1-mediated post-transcriptional regulation is essential for hematopoietic stem and progenitor cell homeostasis (2019) (0)
- Establishment of experimental salivary gland cancer models using organoid culture and patient-derived xenografting (2022) (0)
- intra-single cell sequencing (iSCseq) spotlights transcriptomic and epigenetic heterogeneity inside multinucleated osteoclast (2022) (0)
- Cardiac neural crest lineage diversity and underlying gene regulatory networks revealed by multimodal analysis (2022) (0)
- EXOSC9 depletion attenuates P-body formation, stress resistance, and tumorigenicity of cancer cells (2020) (0)
- Identification of potential regulatory mutations using multi-omics analysis and haplotyping of lung adenocarcinoma cell lines (2018) (0)
- Journal Pre-proof Differing impact of phosphoglycerate mutase 1-deficiency on brown and white adipose tissue (2022) (0)
- The dataset of de novo assembly and inferred functional annotation of the transcriptome of Heterosigma akashiwo, a bloom-forming, cosmopolitan raphidophyte. (2023) (0)
- Author Correction: IκBα is required for full transcriptional induction of some NFκB-regulated genes in response to TNF in MCF-7 cells (2022) (0)
- Elucidating gene regulatory mechanisms underlying human skeletal development using human pluripotent stem cell-derived bone tissues and single-cell multiome analysis (2022) (0)
- Stem cell-based modeling and single-cell multiomics reveal gene-regulatory mechanisms underlying human skeletal development. (2023) (0)
- Staphylococcus aureus utilizes environmental RNA as a building material in specific polysaccharide-dependent biofilms (2022) (0)
- Long-read metagenomics using PromethION uncovers oral bacteriophages and their interaction with host bacteria (2021) (0)
- Multimodal single-cell analyses of peripheral blood mononuclear cells of COVID-19 patients in Japan (2023) (0)
- Transcription factor DUO1 generated by neo-functionalization is associated with evolution of sperm differentiation in plants (2018) (0)
- Development and validation of a new high-throughput method to investigate the clonality of HTLV-1-infected cells based on provirus integration sites (2014) (0)
- Pulmonary Regnase-1 orchestrates the interplay of epithelium and adaptive immune systems to protect against pneumonia (2018) (0)
- Expansions of intronic TTTCA and TTTTA repeats in benign adult familial myoclonic epilepsy (2018) (0)
- S2d2-3 Comparative analysis of mamalian transcriptomes(S2-d2: "Bioinformatics of Transcriptional Regulation",Symposia,Abstract,Meeting Program of EABS & BSJ 2006) (2006) (0)
- Title Translation-dependent unwinding of stem ‒ loops by UPF 1 licenses Regnase-1 to degrade inflammatory mRNAs (2019) (0)
- Correction to ‘Characteristics of nucleosomes and linker DNA regions on the genome of the basidiomycete Mixia osmundae revealed by mono- and dinucleosome mapping’ (2012) (0)
- A new computational method to predict transcriptional activity of a DNA sequence from diverse datasets of massively parallel reporter assays (2017) (0)
- International survey of standardised patients: who they are, what they do, and how they experience their work (2010) (0)
- H3K4me3 histone modification in baculovirus-infected silkworm cells (2021) (0)
- Database and Analysis System of cDNA Sequences Obtained from Full-Length Enriched cDNA Library (1997) (0)
- Full-Length cDNA Libraries: Reagents for Functional Studies of the Nervous System (2001) (0)
- Gene Expression Diversity Analysis in Plasmodium falciparum by Single-Cell Transcriptome Analysis (2016) (0)
- The histone methyltransferase Ezh2 regulates differentiation and plasticity of CD4 T helper cells. (P1334) (2013) (0)
- Author response: The transcriptional cofactor TRIM33 prevents apoptosis in B lymphoblastic leukemia by deactivating a single enhancer (2015) (0)
- Title Transcription factor DUO 1 generated by neo-functionalizationis associated with evolution of sperm differentiation in plants (2019) (0)
- Malaria genome project in Japan (1998) (0)
- Restriction glycosylases: involvement of endonuclease activities in the restriction process. (2016) (0)
- Analysis of whole transcriptome RNA-seq with long-read sequencer MinION (2017) (0)
- A missense mutation in solute carrier family 12, member 1 (SLC12A1) causes hydrallantois in Japanese Black cattle (2016) (0)
- Comparative study between man and cynomolgus macaque (Macaca fascicularis) based on full-length cDNA sequences (2000) (0)
- B cell receptor repertoire analysis from autopsy samples of COVID-19 patients (2023) (0)
- A systematic NGS-based approach for contaminant detection and functional inference (2019) (0)
- A Graph Genome Browser: Visualization of Structural Variations between Genomes using a Graph Structure (2020) (0)
- [Transcriptome analyses using massively paralleled sequencers]. (2009) (0)
- Selected mRNA translation and ribosomopathies: Studying the molecular pathogenesis of congenital anemia using zebrafish (2016) (0)
- Molecular Medicine Role of miR-223 in S . aureus clearance (2019) (0)
- Layer-specific morphological and molecular differences in neocortical astrocytes and their dependence on neuronal layers (2018) (0)
- Analyses of Zebrafish Models of Ribosomopathies and Drug Screening (2019) (0)
- Abstract 12257: Calmodulin Interacting Genes as a Novel Candidate for Pathogenesis of Long-QT Syndrome (2015) (0)
- THE TRANSCRIPTION FACTOR IRF8 EPIGENETICALLY REGULATES EARLY DENDRITIC CELL SPECIFICATION (2019) (0)
- Trans-omic analysis reveals fed and fasting insulin signal across phosphoproteome, transcriptome, and metabolome (2017) (0)
- Assessment of neuron-specific imprinted gene expression in neurons derived from homozygous ESCs (2017) (0)
- Abstract 5134: The identification and characterization of genetic variations in lung adenocarcinomas in a Japanese population (2012) (0)
- identifies gender-specific reprogramming in mice High-resolution DNA methylome analysis of primordial germ cells Material (2013) (0)
- Quest and analyses of the responsible genes in the mutants for biological soliton in multicellular movement (2016) (0)
- Malaria Genome Project in Japan(Abstracts from the Malaria Workshop) (1997) (0)
- Diversification of the restriction–modification system of Streptococcus pyogenes through its acquisition of mobile elements (2020) (0)
- Importance of anaerobic-related gene expression for pathogenicity of Staphylococcus aureus (2017) (0)
- Comprehensive Promoter Analyses Using a Database of Transcription Start Sites ( DBTSS ) (2004) (0)
- Author Correction: Analysis of Müller glia specific genes and their histone modification using Hes1-promoter driven EGFP expressing mouse (2018) (0)
- A clinical trial of somatic and germline analyses for healthy longevity in a postoperative cancer patient (2019) (0)
- [Transcriptome analyses and transcriptome databases]. (2004) (0)
- Human Cancer Biology Contrasting Expression Patterns of Histone mRNA and microRNA 760 in Patients with Gastric Cancer (2013) (0)
- Omics-based label-free metabolic flux inference reveals dysregulation of glucose metabolism in liver associated with obesity (2021) (0)
- Comparative analysis of replication timing of homologous chromosomal regions among humans and other primates. (2000) (0)
- Title MAML 1 Enhances the Transcriptional Activity of Runx 2 and Plays a Rolein Bone Development (2017) (0)
- Bardet–Biedl syndrome and related disorders in Japan (2020) (0)
- Hybrid assembly using long reads resolves repeats and completes the genome sequence of a laboratory strain of Staphylococcus aureus subsp. aureus RN4220 (2021) (0)
- The Number of Transcription Factor Molecules Loading at an Enhancer Determines Gene Expression Quantity (2018) (0)
- Evolution of Gene Expression in Human and Chimpanzee Brains (2013) (0)
- Genome Wide Analysis of the Alternative Splicing Based on Full-Length cDNA Data (2005) (0)
- O-169 Conventional ovarian stimulation with gonadotropins depletes the developmental proteome of mouse oocytes, reducing their size and compromising their fetal yield (2021) (0)
- p53 binds to the CDH1 locus in epithelial cells to antagonize EZH2-mediated H3K27me3 deposition and the onset of mesenchymal programs (2017) (0)
- Artificially designed hybrids facilitate efficient generation of high-resolution linkage maps (2018) (0)
- Enhanced functional divergence of duplicate genes several million years after gene duplication in the Arabidopsis lineage (2016) (0)
- Long-term culture of human iPS cell-derived alveolar stem cells harboring cellular heterogeneity in organoids (2017) (0)
- Multi-omics analysis of lung cancer cell lines for elucidating vulnerability of cancer genomes (2017) (0)
- Identification of physical interactions between genomic regions by enChIP-Seq (2016) (0)
- Detection of mutations by full-length RNA-seq using "MinION" (2016) (0)
- Construction and Analysis of Full length-enriched and 5′-end-enriched cDNA libraries using the "Oligo-Capping" (1999) (0)
- Title HTLV-1 bZIP Factor Impairs Anti-viral Immunity by Inducing Co-inhibitory Molecule, T Cell Immunoglobulin and ITIM (2019) (0)
- No novel, high penetrant gene might remain to be found in Japanese patients with unknown MODY (2018) (0)
- The impact of full-length cDNA library to genome sequencing of malaria parasites, Plasmodium species. (2004) (0)
- Flexible selection of diversified Na+/K+-ATPase α-subunit isoforms for osmoregulation in teleosts (2016) (0)
- Analysis of RNA decay factor mediated RNA stability contributions on RNA abundance (2015) (0)
- Establishment of an efficient method to construct ultrahigh-resolution linkage maps using hybrid species (2017) (0)
- Genome-wide mapping of histone modifications mediated by the polycomb-group complexes in fetal liver and adult bone marrow hematopoietic progenitor cells (2013) (0)
- Analysis of the molecular pathogenesis of Diamond-Blackfun anemia using zebrafish as a model animal (2017) (0)
- The effects of GATA3 knockdown on the gene expression of Th2-1 st , Th2-4 th and memory Th2 cells. (2013) (0)
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What Schools Are Affiliated With Yutaka Suzuki?
Yutaka Suzuki is affiliated with the following schools:
