Timothy M. Vogel
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Timothy M. Vogelcomputer-science Degrees
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Computer Science
Timothy M. Vogel's Degrees
- PhD Computer Science Stanford University
- Masters Computer Science University of California, Berkeley
- Bachelors Computer Science University of California, Berkeley
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(Suggest an Edit or Addition)Timothy M. Vogel's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- ES Critical Reviews: Transformations of halogenated aliphatic compounds. (1987) (835)
- Biotransformation of tetrachloroethylene to trichloroethylene, dichloroethylene, vinyl chloride, and carbon dioxide under methanogenic conditions (1985) (634)
- Transformation of toluene and benzene by mixed methanogenic cultures (1987) (462)
- Substrate interactions of benzene, toluene, and para-xylene during microbial degradation by pure cultures and mixed culture aquifer slurries (1991) (351)
- Extraction of DNA from soil (2003) (309)
- Bioaugmentation as a soil bioremediation approach. (1996) (307)
- Accessing the Soil Metagenome for Studies of Microbial Diversity (2010) (275)
- Handbook of Bioremediation (1993) (262)
- Large-Scale Metagenomic-Based Study of Antibiotic Resistance in the Environment (2014) (243)
- Incorporation of Oxygen from Water into Toluene and Benzene during Anaerobic Fermentative Transformation (1986) (241)
- TerraGenome: a consortium for the sequencing of a soil metagenome (2009) (237)
- In Situ Transfer of Antibiotic Resistance Genes from Transgenic (Transplastomic) Tobacco Plants to Bacteria (2002) (206)
- Structure, fluctuation and magnitude of a natural grassland soil metagenome (2012) (189)
- Abiotic and biotic transformations of 1,1,1-trichloroethane under methanogenic conditions (1987) (182)
- Antibiotic-resistant soil bacteria in transgenic plant fields (2008) (180)
- Modeling transport and biodegradation of benzene and toluene in sandy aquifer material: Comparisons With experimental measurements (1992) (179)
- Complete degradation of polychlorinated hydrocarbons by a two-stage biofilm reactor (1991) (162)
- Ground-Water Treatment for Chlorinated Solvents (1994) (155)
- Rhodanobacter lindaniclasticus gen. nov., sp. nov., a lindane-degrading bacterium. (1999) (150)
- High molecular weight DNA recovery from soils prerequisite for biotechnological metagenomic library construction. (2005) (147)
- Phylogenetic Analysis of Polyketide Synthase I Domains from Soil Metagenomic Libraries Allows Selection of Promising Clones (2004) (144)
- Is resistance futile? Changing external resistance does not improve microbial fuel cell performance. (2010) (133)
- Characterization of a soil bacterial consortium capable of degrading diesel fuel (1999) (131)
- Bioremediation of chlorinated solvents using alternate electron acceptors. (1994) (127)
- Effects of Organic Substrates on Dechlorination of Aroclor 1242 in Anaerobic Sediments (1990) (125)
- Metagenomic comparison of direct and indirect soil DNA extraction approaches. (2011) (121)
- Potential of a 16S rRNA-Based Taxonomic Microarray for Analyzing the Rhizosphere Effects of Maize on Agrobacterium spp. and Bacterial Communities (2006) (119)
- Back to the Future of Soil Metagenomics (2016) (116)
- Human Pathogens Abundant in the Bacterial Metagenome of Cigarettes (2009) (113)
- The metagenomics of disease-suppressive soils - experiences from the METACONTROL project. (2008) (107)
- Horizontal Gene Transfer Regulation in Bacteria as a “Spandrel” of DNA Repair Mechanisms (2007) (100)
- Metagenomic mining for microbiologists (2011) (100)
- Development and validation of a prototype 16S rRNA-based taxonomic microarray for Alphaproteobacteria. (2006) (98)
- Microbial sequences retrieved from environmental samples from seasonal Arctic snow and meltwater from Svalbard, Norway (2010) (98)
- Kinetics of aerobic biodegradation of benzene and toluene in sandy aquifer material (2004) (96)
- Metagenomic exploration of antibiotic resistance in soil. (2011) (95)
- Degradation and Transformability of DNA from Transgenic Leaves (2003) (94)
- Isolation and characterization of a novel gamma-hexachlorocyclohexane-degrading bacterium (1996) (93)
- Comparison of substrate utilization and growth kinetics between immobilized and suspended Pseudomonas cells (1993) (81)
- Type I Polyketide Synthases May Have Evolved Through Horizontal Gene Transfer (2005) (80)
- Reduction dechlorination of carbon tetrachloride by cobalamin(II) in the presence of dithiothreitol: mechanistic study, effect of redox potential and pH. (1994) (79)
- Microbial fuel cell anodic microbial population dynamics during MFC start-up. (2017) (79)
- Visual Evidence of Horizontal Gene Transfer between Plants and Bacteria in the Phytosphere of Transplastomic Tobacco (2009) (77)
- Natural bioremediation of chlorinated solvents. (1994) (77)
- Fate and transport of antibiotic resistance genes in saturated soil columns (2003) (76)
- Effects of electron acceptors and donors on transformation of tetrachloromethane by Shewanella putrefaciens MR-1. (1994) (73)
- Degradation of BTEX and their aerobic metabolites by indigenous microorganisms under nitrate reducing conditions (1995) (72)
- Biodegradation of monoaromatic hydrocarbons in aquifer columns amended with hydrogen peroxide and nitrate (1993) (69)
- Reconstructing rare soil microbial genomes using in situ enrichments and metagenomics (2015) (67)
- Reductive dechlorination of a polychlorinated biphenyl congener and hexachlorobenzene by vitamin B12 (1992) (67)
- Distribution and location of polycyclic aromatic hydrocarbons (PAHs) and PAH-degrading bacteria within polluted soil aggregates (2004) (65)
- Laboratory-Scale Evidence for Lightning-Mediated Gene Transfer in Soil (2001) (65)
- Characterization of Denitrification Gene Clusters of Soil Bacteria via a Metagenomic Approach (2008) (64)
- Drugs from hidden bugs: their discovery via untapped resources. (2008) (63)
- Plasmid-encoded gamma-hexachlorocyclohexane degradation genes and insertion sequences in Sphingobium francense (ex-Sphingomonas paucimobilis Sp+). (2006) (62)
- Microbial community development and unseen diversity recovery in inoculated sterile soil (2014) (62)
- A novel method for characterizing the microscale 3D spatial distribution of bacteria in soil (2003) (61)
- The Dynamic Arctic Snow Pack: An Unexplored Environment for Microbial Diversity and Activity (2013) (59)
- Low-temperature formation of hydrocarbon gases in San Francisco Bay sediment (California, U.S.A.) (1982) (59)
- RATE OF ABIOTIC FORMATION OF 1,1-DICHLOROETHYLENE FROM 1,1,1-TRICHLOROETHANE IN GROUNDWATER (1987) (58)
- Potential drivers of microbial community structure and function in Arctic spring snow (2014) (57)
- Development of metagenomic DNA shuffling for the construction of a xenobiotic gene. (2006) (55)
- Life on Human Surfaces: Skin Metagenomics (2013) (54)
- Advantages of the metagenomic approach for soil exploration: reply from Vogel et al. (2009) (54)
- Global airborne microbial communities controlled by surrounding landscapes and wind conditions (2019) (52)
- Cytochromes P450-mediated degradation of fuel oxygenates by environmental isolates. (2010) (50)
- Describing microbial communities and performing global comparisons in the ‘omic era (2012) (49)
- Snow and ice ecosystems: not so extreme. (2015) (48)
- In situ TCE degradation mediated by complex dehalorespiring communities during biostimulation processes (2012) (47)
- Microbial nitrogen cycling in Arctic snowpacks (2013) (47)
- Interactions between Snow Chemistry, Mercury Inputs and Microbial Population Dynamics in an Arctic Snowpack (2013) (46)
- Isolation of Lightning-Competent Soil Bacteria (2004) (46)
- Combined iron and sulfate reduction biostimulation as a novel approach to enhance BTEX and PAH source-zone biodegradation in biodiesel blend-contaminated groundwater. (2017) (43)
- Fate of transgenic plant DNA in the environment. (2007) (43)
- Strategy for In Situ Detection of Natural Transformation-Based Horizontal Gene Transfer Events (2007) (41)
- IS EVERYTHING EVERYWHERE (2009) (41)
- Methods to Investigate the Global Atmospheric Microbiome (2019) (38)
- Microbial composition in seasonal time series of free tropospheric air and precipitation reveals community separation (2019) (36)
- Hydrocarbon biostimulation and bioaugmentation in organic carbon and clay-rich soils (2016) (34)
- Functional Basis of Microorganism Classification (2015) (33)
- Kinetics of Toluene Degradation by Denitrifying Aquifer Microorganisms (1994) (33)
- Opportunistic Colonization Ralstonia solanacearum-Infected Plants by Acinetobacter sp. and Its Natural Competence Development (2002) (32)
- Ethyl tert-butyl ether (ETBE) biodegradation by a syntrophic association of Rhodococcus sp. IFP 2042 and Bradyrhizobium sp. IFP 2049 isolated from a polluted aquifer (2013) (31)
- Identification of the Proton Source for the Microbial Reductive Dechlorination of 2,3,4,5,6-Pentachlorobiphenyl (1991) (31)
- The importance of metagenomic surveys to microbial ecology: or why Darwin would have been a metagenomic scientist (2011) (31)
- Evaluation of Soil Organic Matter Polarity by Pyrene Fluorescence Spectrum Variations (1997) (30)
- Vertical advection of extracellular DNA by water capillarity in soil columns (2007) (29)
- Microbial ecology of chlorinated solvent biodegradation. (2015) (28)
- Detection of potential transgenic plant DNA recipients among soil bacteria. (2007) (28)
- Evaluation of functional gene enrichment in a soil metagenomic clone library. (2009) (27)
- Seasonal shift in airborne microbial communities. (2020) (27)
- Bioventing of petroleum hydrocarbons. (1994) (27)
- Bioaugmentation for Groundwater Remediation: an Overview (2013) (26)
- In-Situ Bioremediation of Soils and Ground Water Contaminated with Petroleum Hydrocarbons (1994) (25)
- The future of skin metagenomics. (2014) (25)
- Evolution of Sphingomonad Gene Clusters Related to Pesticide Catabolism Revealed by Genome Sequence and Mobilomics of Sphingobium herbicidovorans MH (2017) (24)
- Development of pure culture biofilms of P. putida on solid supports (1991) (24)
- Sources and selection of snow-specific microbial communities in a Greenlandic sea ice snow cover (2019) (23)
- Characterization of new bacterial catabolic genes and mobile genetic elements by high throughput genetic screening of a soil metagenomic library. (2014) (23)
- Monitoring of bacterial communities during low temperature thermal treatment of activated sludge combining DNA phylochip and respirometry techniques. (2010) (23)
- Geochemical prospecting for hydrocarbons in the outer continental shelf, Southern Bering Sea, Alaska (1981) (23)
- Effect of carbon and nitrogen input on the bacterial community structure of Neocaledonian nickel mine spoils. (2005) (23)
- Comparative phylogenetic microarray analysis of microbial communities in TCE-contaminated soils. (2010) (22)
- Natural Electrotransformation of Lightning-Competent Pseudomonas sp. Strain N3 in Artificial Soil Microcosms (2006) (22)
- Reaction products and rates of disappearance of simple bromoalkanes, 1,2-dibromopropane, and 1,2-dibromoethane in water. (1986) (21)
- Mastering methodological pitfalls for surviving the metagenomic jungle (2013) (18)
- Do Organic Substrates Drive Microbial Community Interactions in Arctic Snow? (2019) (18)
- Extracellular plant DNA in Geneva groundwater and traditional artesian drinking water fountains. (2009) (18)
- Intergeneric transfer of chromosomal and conjugative plasmid genes between Ralstonia solanacearum and Acinetobacter sp. BD413. (2003) (17)
- Leaching and transformability of transgenic DNA in unsaturated soil columns. (2010) (17)
- Linking environmental prokaryotic viruses and their host through CRISPRs. (2015) (17)
- Selective occurrence of Rhizobiales in frost flowers on the surface of young sea ice near Barrow, Alaska and distribution in the polar marine rare biosphere. (2013) (15)
- Correction. Reaction products and rates of disappearance of simple bromoalkanes, 1,2-dibromopropane, and 1,2-dibromoethane in water. (1987) (15)
- Beyond the planetary boundary layer: Bacterial and fungal vertical biogeography at Mount Sonnblick, Austria (2019) (14)
- Stainless steel coated with carbon nanofiber/PDMS composite as anodes in microbial fuel cells (2020) (14)
- Treatment of Petroleum Hydrocarbons in Ground Water by Air Sparging (1994) (14)
- Dechlorination of 2,3,5,6-tetrachlorobiphenyl by a phototrophic enrichment culture. (1992) (14)
- Integrity and biological activity of DNA after UV exposure. (2010) (13)
- In-situ bioremediation technologies for petroleum-derived hydrocarbons based on alternate electron acceptors (other than molecular oxygen). (1994) (13)
- Community structure and functional genes in radionuclide contaminated soils in Chernobyl and Fukushima. (2019) (13)
- Effect of hydrogen peroxide on the biodegradation of PCBs in anaerobically dechlorinated river sediments (2004) (13)
- MicroNiche: an R package for assessing microbial niche breadth and overlap from amplicon sequencing data. (2020) (12)
- Long-term persistence and bacterial transformation potential of transplastomic plant DNA in soil. (2010) (11)
- Aminoglycosides analysis optimization using ion pairing liquid chromatography coupled to tandem mass spectrometry and application on wastewater samples. (2021) (11)
- A Modified Approach for in Situ Chemical Oxidation Coupled to Biodegradation Enhances Light Nonaqueous Phase Liquid Source-Zone Remediation. (2017) (11)
- A novel and rapid method for synthesizing positive controls and standards for quantitative PCR. (2008) (10)
- Biodiesel presence in the source zone hinders aromatic hydrocarbons attenuation in a B20-contaminated groundwater. (2016) (8)
- THE DIVERSITY OF CULTIVABLE HYDROCARBON-DEGRADING BACTERIA ISOLATED FROM CRUDE OIL CONTAMINATED SOIL AND SLUDGE FROM ARZEW REFINERY IN ALGERIA (2019) (8)
- Spatial analysis of bacteria in brackish lake sediment (2020) (7)
- Retrospective on microbial transformations of halogenated organics. (2020) (7)
- Variation over time of excavated soil properties treated with surfactants (2018) (7)
- Functional trait relationships demonstrate life strategies in terrestrial prokaryotes. (2021) (7)
- Ethyl tert-butyl ether (ETBE)-degrading microbial communities in enrichments from polluted environments. (2014) (6)
- Microbial functional signature in the atmospheric boundary layer (2020) (6)
- Presentation of the Thematic Issue on Horizontal Gene Transfer (2007) (6)
- Prediction of chemicals biodegradation in soils: a tentative of modeling (1999) (5)
- Snow microbiome functional analyses reveal novel aspects of microbial metabolism of complex organic compounds (2020) (4)
- To sequence or not to sequence the whole-soil metagenome? (2009) (4)
- Bioaugmentation as a Strategy for the Treatment of Persistent Pollutants (2011) (4)
- Over Winter Microbial Processes in a Svalbard Snow Pack: An Experimental Approach (2020) (4)
- Microbial community networks. (2008) (4)
- Bioremediation via In Situ Electrotransformation (2010) (4)
- Letters. Errata for Critical Review (v. 21 p 722-36) "Transformations of Halogenated Aliphatic Compounds" (1987) (3)
- Bacterial Competition for the Anode Colonization under Different External Resistances in Microbial Fuel Cells (2022) (3)
- Gentamicin Adsorption onto Soil Particles Prevents Overall Short-Term Effects on the Soil Microbiome and Resistome (2021) (3)
- Transcriptomic responses to warming and cooling of an Arctic tundra soil microbiome (2019) (3)
- Environmental and Anthropogenic Factors Shape the Snow Microbiome and Antibiotic Resistome (2022) (2)
- Gene flow in the rhizosphere (2007) (2)
- Substrate Interactions ofBenzene, Toluene, andpara-Xylene during Microbial Degradation byPureCultures andMixedCulture Aquifer Slurries (1991) (2)
- Natural Pseudomonas sp. strain N3 in artificial soil microcosms. (2006) (2)
- Bioventing of chlorinated solvents for ground-water cleanup through bioremediation. (1994) (2)
- Factors Controlling the Biodegradation of Chemicals in Soils (1999) (2)
- Seasonal changes in snow chemistry lead to new insights into mercury methylation in the Arctic (2010) (1)
- Ethyl tert-butyl ether (ETBE) biodegradation by a syntrophic association of Rhodococcus sp. IFP 2042 and Bradyrhizobium sp. IFP 2049 isolated from a polluted aquifer (2013) (1)
- Microbial community development and unseen diversity recovery in inoculated sterile soil (2014) (1)
- Effect of Contact Area and Shape of Anode Current Collectors on Bacterial Community Structure in Microbial Fuel Cells (2022) (1)
- Assessing the impact of genetically modified plants on the environment using NGS; a case study on transgenic grapevine rootstocks expressing viral coat protein and bacterial nptII transgenes (2013) (1)
- Reaction products and rates of disappearance of simple bromoalkanes, 1,2-dibromopropane, and 1,2-dibromoethane in water. Reply to comments. (1988) (1)
- Microbial Ecology of the Planetary Boundary Layer (2020) (1)
- Sequencing Depth Has a Stronger Effect than DNA Extraction on Soil Bacterial Richness Discovery (2022) (1)
- Gentamicin at sub-inhibitory concentrations selects for antibiotic resistance in the environment (2022) (1)
- Soil Metagenomic Exploration of the Rare Biosphere (2011) (1)
- Reductive Dechlorination ofa Polychlorinated Biphenyl Congener andHexachlorobenzene byVitamin B12 (1992) (1)
- Viruses keep Arctic microbial adaptation from its breaking point (2013) (0)
- Characterization of a Microbial Fuel Cell with a New Configuration for Scale-up in Wastewater Treatment Plant (2015) (0)
- COMPARISON BETWEEN TOTAL AND ACTIVE BACTERIAL COMMUNITIES IN SOIL CONTAMINATED BY CHLORINATED COMPOUNDS, USING PYROSEQUENCING AND MICROARRAYS (2009) (0)
- Snow Microbiome Functional Analyses Reveal Novel Microbial Metabolism of Complex Organic Compounds (2020) (0)
- ADDITIONS AND CORRECTIONS (2004) (0)
- GENOME FLEXIBILITY ACROSS DIFFERENT STRAINS OF THE HEXACHLOROCYCLANE-DEGRADING BACTERIUM SPHINGOBIUM FRANCENSE SP+ IDENTIFIED BY A GLOBAL APPROACH OF GENOME SEQUENCING AND MICROARRAY COMPARATIVE GENOMIC HYBRIDIZATION (2009) (0)
- Identification oftheProtonSourcefortheMicrobial Reductive (1991) (0)
- Mixed target genetic screening of a fosmid metagenomic soil library (2013) (0)
- FROM “OMICS” TO “OHMICS”: ELECTRICITYPRODUCING BACTERIAL COMMUNITY STRUCTURES IN MICROBIAL FUEL CELLS (2009) (0)
- PRECHEMICAL OXIDATION AND MICROBIOLOGICAL PROCESSES FOR THE DEGRADATION OF BIODIESEL IN GROUNDWATER (2015) (0)
- Microbiology of the Cryosphere: Diversity, Habitat Constraints and Ecology (2021) (0)
- COMPARATIVE ANALYSIS OF MICROARRAY, RISA AND SEQUENCING APPROACHES FOR MICROBIAL COMMUNITY ANALYSES (2009) (0)
- COMPLETE SEQUENCING OF THE SOIL METAGENOME: AN ATTAINABLE UTOPIA? (2009) (0)
- Managing microbial communities for sequentially reconstruct genomes from complex metagenomes (2013) (0)
- The Arctic snowpack microbial community highlighted by metagenomics and metatranscriptomics (2013) (0)
- GEOMICROBIOLOGY OF EXTREME SOILS (2009) (0)
- Optimization of anode current collector in microbial fuel cell for improved power output and bacterial development (2016) (0)
- Free Tropospheric Precipitation does not serve as Proxy for Air Microbial Composition (2019) (0)
- Metagenomic library selection and validation by pyrosequencing (2008) (0)
- GEOMICROBIOLOGY OF EXTREME SOILS ALONG A TRANSECT-SLOPE (2008) (0)
- EggVio: a user friendly and versatile pipeline for assembly and functional annotation of shallow depth sequenced samples (2022) (0)
- Viral-host interactions in glacial ice and their adaptive significance (2015) (0)
- METAGENOMIC: INSIGHTS ON EXTREME METABOLISM (2008) (0)
- Sources and selection of snow-specific microbial communities in a Greenlandic sea ice snow cover (2019) (0)
- Microbial life in the arctic snowpack photochemical reactor (2015) (0)
- Impact of in situ solar irradiation on snow bacterial communities and functional potential. (2023) (0)
- Managing microbial communities for finding new enzymes and sequentially reconstruct genomes from complex metagenomes (2013) (0)
- Author Correction: Global airborne microbial communities controlled by surrounding landscapes and wind conditions (2020) (0)
- Geochemical Prospecting for Hydrocarbons in Navarin Basin Province: ABSTRACT (1981) (0)
- "agricultural Biomarkers for Array-technology" Chip Production and Analysis and Environmental Monitoring (2005) (0)
- Supplementary material to "Microbial functional signature in the atmospheric boundary layer" (2020) (0)
- Development of a knowledge-based Bioremediation Advisor. Symp. (1993) (0)
- Snow Microorganisms Colonise Arctic Soils Following Snow Melt. (2023) (0)
- Soil metagenomics to identify novel mechanisms of antagonism and antifungal activity for the improved control of phytopathogens (2008) (0)
- Production of a biofilm on an electrode for biofuel cell, and biofuel cell electrode obtained. (2008) (0)
- Selection processes of Arctic seasonal glacier snowpack bacterial communities (2023) (0)
- Soil metagenomics: can we access the diversity? (2010) (0)
- Microbial diversity and function during different bioremediation strategies of diesel-polluted soil (2015) (0)
- Biodechlord search for evidence for microbial degradation of chlordecone in French West Indies contaminated soils (2014) (0)
- Microbial ecology approach of anodic biofilms for the study of scaled-up microbial fuel cells (2015) (0)
- ASSESSING DEHALOGENASE ACTIVITIES UTILIZING INTEGRATING QUANTITATIVE PCR AND MICROARRAYS DURING PCE BIOREMEDIATION : THE CONTRUCTION OF A NEW DEGRADATION MODEL (2009) (0)
- NOTES Isolation and Characterization of a Novel (cid:103) -Hexachlorocyclohexane-Degrading Bacterium (1996) (0)
- WHERE DO DEHALOGENASES COME FROM ? A MULTIDISCIPLINARY STUDY HIGHLIGHTS THE PRIMARY ROLE OF HORIZONTAL GENE TRANSFER DURING RECENT FUNCTIONAL ADAPTATION (2009) (0)
- Evolution and Interaction of Microbial Communities in Mangrove Microbial Fuel Cells and First Description of Shewanella Fodinae as Electroactive (2023) (0)
- Electrochemistry and microbial ecology approach of anodic biofilms for the study of scaled-up microbial fuel cells (2015) (0)
- MICROBIAL CANNIBALISM IN EXTREME STARVED ENVIRONMENT (2009) (0)
- Microorganisms Floating Through the Air (2022) (0)
- HOW MICROBIAL COMMUNITY STRUCTURE AND FUNCTION RELATE TO EACH OTHER WHEN CHLORINATED COMPOUNDS ARE INVOLVED (2008) (0)
- of Microbial Diversity Accessing the Soil Metagenome for Studies (2013) (0)
- Back to the Wild: Polluted Site Remediation and Biosphere Resilience (2021) (0)
- Terragenome-The Soil Metagenome Network (2014) (0)
- Horizontal gene transfer from transplastomic plants to bacteria. (2004) (0)
- Author Correction: Global airborne microbial communities controlled by surrounding landscapes and wind conditions (2020) (0)
- STRUCTURE AND PERFORMANCE OF ELECTRO-ACTIVE BACTERIAL COMMUNITIES IN MICROBIAL FUEL CELLS UNDER VARYING OPERATING CONDITIONS (2009) (0)
- The Dynamic Arctic Snowpack Microbial Habitat (2013) (0)
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