Graziano Pesole
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Biology
Graziano Pesole's Degrees
- Bachelors Biology University of Bologna
- Masters Biotechnology University of Bologna
- PhD Bioinformatics University of Milan
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(Suggest an Edit or Addition)Graziano Pesole's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- The Transcriptional Landscape of the Mammalian Genome (2005) (3394)
- The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla (2007) (3261)
- Evolution of genes and genomes on the Drosophila phylogeny (2007) (1992)
- Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs (2002) (1543)
- Assessing computational tools for the discovery of transcription factor binding sites (2005) (1393)
- Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita (2008) (1014)
- Untranslated regions of mRNAs (2002) (922)
- Functional annotation of a full-length mouse cDNA collection (2001) (682)
- Weeder Web: discovery of transcription factor binding sites in a set of sequences from co-regulated genes (2004) (532)
- Evolution of the mitochondrial genome of Metazoa as exemplified by comparison of congeneric species (2008) (497)
- Mammalian mitochondrial D-loop region structural analysis: identification of new conserved sequences and their functional and evolutionary implications. (1997) (488)
- Nucleotide Substitution Rate of Mammalian Mitochondrial Genomes (1999) (457)
- Evolutionary genomics in Metazoa: the mitochondrial DNA as a model system. (1999) (434)
- Structural and functional features of eukaryotic mRNA untranslated regions. (2001) (409)
- An algorithm for finding signals of unknown length in DNA sequences (2001) (384)
- Pscan: finding over-represented transcription factor binding site motifs in sequences from co-regulated or co-expressed genes (2009) (370)
- The guinea-pig is not a rodent (1996) (356)
- Asymmetrical directional mutation pressure in the mitochondrial genome of mammals. (1998) (348)
- UTRdb and UTRsite (RELEASE 2010): a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs (2009) (300)
- UTRdb and UTRsite: specialized databases of sequences and functional elements of 5' and 3' untranslated regions of eukaryotic mRNAs (2000) (272)
- uAUG and uORFs in human and rodent 5'untranslated mRNAs. (2005) (248)
- A transcriptional sketch of a primary human breast cancer by 454 deep sequencing (2009) (229)
- BALB/c and C57BL/6 Mice Differ in Polyreactive IgA Abundance, which Impacts the Generation of Antigen-Specific IgA and Microbiota Diversity. (2015) (228)
- The main regulatory region of mammalian mitochondrial DNA: Structure-function model and evolutionary pattern (1991) (223)
- REDIportal: a comprehensive database of A-to-I RNA editing events in humans (2016) (216)
- Building essential biodiversity variables (EBVs) of species distribution and abundance at a global scale (2018) (205)
- REDItools: high-throughput RNA editing detection made easy (2013) (202)
- Evolutionary analysis of cytochrome b sequences in some perciformes: Evidence for a slower rate of evolution than in mammals (1994) (191)
- Bioinformatics approaches for genomics and post genomics applications of next-generation sequencing (2010) (186)
- Profiling RNA editing in human tissues: towards the inosinome Atlas (2015) (179)
- UTRdb and UTRsite: a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs (2004) (178)
- Endogenous murine microbiota member Faecalibaculum rodentium and its human homolog protect from intestinal tumor growth (2019) (171)
- MToolBox: a highly automated pipeline for heteroplasmy annotation and prioritization analysis of human mitochondrial variants in high-throughput sequencing (2014) (157)
- The 67-kDa laminin receptor originated from a ribosomal protein that acquired a dual function during evolution. (1998) (140)
- Motif discovery and transcription factor binding sites before and after the next-generation sequencing era (2012) (138)
- Influence of base composition on quantitative estimates of gene evolution. (1990) (135)
- Large-scale detection and analysis of RNA editing in grape mtDNA by RNA deep-sequencing (2010) (135)
- Where do rodents fit? Evidence from the complete mitochondrial genome of Sciurus vulgaris. (2000) (134)
- Evolution of the mitochondrial genetic system: an overview. (2000) (134)
- Developmental factor IRF6 exhibits tumor suppressor activity in squamous cell carcinomas (2011) (133)
- PatSearch: a program for the detection of patterns and structural motifs in nucleotide sequences (2003) (131)
- Congruent mammalian trees from mitochondrial and nuclear genes using Bayesian methods. (2003) (129)
- Tissue-specific mtDNA abundance from exome data and its correlation with mitochondrial transcription, mass and respiratory activity. (2015) (129)
- UTRdb and UTRsite: specialized databases of sequences and functional elements of 5' and 3' untranslated regions of eukaryotic mRNAs. Update 2002 (2002) (128)
- Diversity and temporal patterns of planktonic protist assemblages at a Mediterranean Long Term Ecological Research site (2017) (125)
- Lineage-specific evolutionary rate in mammalian mtDNA. (2000) (124)
- Glutamine synthetase gene evolution: a good molecular clock. (1991) (124)
- Identification and functional characterization of two new transcriptional variants of the human p63 gene (2009) (123)
- Metagenomics Reveals Dysbiosis and a Potentially Pathogenic N. flavescens Strain in Duodenum of Adult Celiac Patients (2016) (120)
- Internet resources for the functional analysis of 5' and 3' untranslated regions of eukaryotic mRNAs. (1999) (118)
- SpliceAid-F: a database of human splicing factors and their RNA-binding sites (2012) (115)
- Discrimination of Non-Protein-Coding Transcripts from Protein-Coding mRNA (2006) (111)
- Changes in Escherichia coli transcriptome during acclimatization at low temperature. (2003) (111)
- Mitochondrial genomes gleaned from human whole-exome sequencing (2012) (109)
- Structural and compositional features of untranslated regions of eukaryotic mRNAs. (1997) (107)
- In silico representation and discovery of transcription factor binding sites (2004) (106)
- Next generation sequencing of SARS-CoV-2 genomes: challenges, applications and opportunities (2020) (102)
- Reference databases for taxonomic assignment in metagenomics (2012) (98)
- High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera (2009) (96)
- PatSearch: a pattern matcher software that finds functional elements in nucleotide and protein sequences and assesses their statistical significance (2000) (96)
- CLEANUP: a fast computer program for removing redundancies from nucleotide sequence databases (1996) (95)
- Mitochondrial DNA in metazoa: degree of freedom in a frozen event. (2002) (93)
- Complete mitochondrial DNA sequence of the fat dormouse, Glis glis: further evidence of rodent paraphyly. (1998) (92)
- Phylogenetic comparison of huntingtin homologues reveals the appearance of a primitive polyQ in sea urchin. (2008) (90)
- MoD Tools: regulatory motif discovery in nucleotide sequences from co-regulated or homologous genes (2006) (87)
- p53FamTaG: a database resource of human p53, p63 and p73 direct target genes combining in silico prediction and microarray data (2007) (86)
- Mitogenomics reveals two cryptic species in Ciona intestinalis. (2007) (82)
- WORDUP: an efficient algorithm for discovering statistically significant patterns in DNA sequences. (1992) (78)
- Massive transcriptome sequencing of human spinal cord tissues provides new insights into motor neuron degeneration in ALS (2017) (78)
- The Untranslated Regions of Eukaryotic MRNAs: Structure, Function, Evolution and Bioinformatic Tools for Their Analysis (2000) (78)
- On the statistical assessment of classifiers using DNA microarray data (2006) (77)
- Whole transcriptome profiling of Late-Onset Alzheimer’s Disease patients provides insights into the molecular changes involved in the disease (2018) (76)
- PscanChIP: finding over-represented transcription factor-binding site motifs and their correlations in sequences from ChIP-Seq experiments (2013) (71)
- T Follicular Helper Cells Promote a Beneficial Gut Ecosystem for Host Metabolic Homeostasis by Sensing Microbiota-Derived Extracellular ATP (2017) (70)
- Correlated substitution analysis and the prediction of amino acid structural contacts (2007) (69)
- RAP: RNA-Seq Analysis Pipeline, a new cloud-based NGS web application (2015) (67)
- Investigating RNA editing in deep transcriptome datasets with REDItools and REDIportal (2020) (67)
- Analysis of oligonucleotide AUG start codon context in eukariotic mRNAs. (2000) (66)
- The evolution of the mitochondrial D-loop region and the origin of modern man. (1992) (64)
- Evolutionary origin of nonuniversal CUGSer codon in some Candida species as inferred from a molecular phylogeny. (1995) (63)
- Single-cell transcriptomics reveals specific RNA editing signatures in the human brain. (2017) (63)
- Computational methods for ab initio and comparative gene finding. (2010) (62)
- The influence of invasive jellyfish blooms on the aquatic microbiome in a coastal lagoon (Varano, SE Italy) detected by an Illumina-based deep sequencing strategy (2015) (61)
- The Members of the RH Gene Family (RH50 and RH30) Followed Different Evolutionary Pathways (1999) (60)
- Lineage Specificity of the Evolutionary Dynamics of the mtDNA D-Loop Region in Rodents (2002) (58)
- Intestinal microbiota sustains inflammation and autoimmunity induced by hypomorphic RAG defects (2016) (57)
- Long-branch attraction phenomenon and the impact of among-site rate variation on rodent phylogeny. (2000) (57)
- TRIM8 modulates p53 activity to dictate cell cycle arrest (2012) (54)
- WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences (2007) (53)
- Complexity and Dynamics of the Winemaking Bacterial Communities in Berries, Musts, and Wines from Apulian Grape Cultivars through Time and Space (2016) (53)
- TRIM8 restores p53 tumour suppressor function by blunting N-MYC activity in chemo-resistant tumours (2017) (52)
- BioMaS: a modular pipeline for Bioinformatic analysis of Metagenomic AmpliconS (2015) (52)
- Correction: High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera (2010) (52)
- MitoZoa 2.0: a database resource and search tools for comparative and evolutionary analyses of mitochondrial genomes in Metazoa (2011) (52)
- WEP: a high-performance analysis pipeline for whole-exome data (2013) (51)
- Phylogenetic analyses of complete mitochondrial genome sequences suggest a basal divergence of the enigmatic rodent Anomalurus (2007) (51)
- Glutamine synthetase gene evolution in bacteria. (1995) (51)
- Complete mtDNA of Ciona intestinalis Reveals Extensive Gene Rearrangement and the Presence of an atp8 and an Extra trnM Gene in Ascidians (2004) (51)
- ASPicDB: A database resource for alternative splicing analysis (2008) (51)
- Differences in Gene Expression and Cytokine Release Profiles Highlight the Heterogeneity of Distinct Subsets of Adipose Tissue-Derived Stem Cells in the Subcutaneous and Visceral Adipose Tissue in Humans (2013) (50)
- Elucidating the editome: bioinformatics approaches for RNA editing detection (2019) (49)
- Comparative Genomics of Listeria Sensu Lato: Genus-Wide Differences in Evolutionary Dynamics and the Progressive Gain of Complex, Potentially Pathogenicity-Related Traits through Lateral Gene Transfer (2015) (49)
- A novel method for estimating substitution rate variation among sites in a large dataset of homologous DNA sequences. (2001) (48)
- Towards global interoperability for supporting biodiversity research on essential biodiversity variables (EBVs) (2015) (48)
- MitoZoa: a curated mitochondrial genome database of metazoans for comparative genomics studies. (2010) (47)
- What is a gene? An updated operational definition. (2008) (47)
- Mitochondrial phylogeny of Anura (Amphibia): a case study of congruent phylogenetic reconstruction using amino acid and nucleotide characters. (2006) (47)
- REDIportal: millions of novel A-to-I RNA editing events from thousands of RNAseq experiments (2020) (47)
- The era of reference genomes in conservation genomics. (2022) (46)
- Regularized Least Squares Cancer Classifiers from DNA microarray data (2005) (46)
- Dynamic inosinome profiles reveal novel patient stratification and gender-specific differences in glioblastoma (2019) (45)
- Gene expression profile of endothelial cells during perturbation of the gut vascular barrier (2016) (44)
- UTRdb: a specialized database of 5'- and 3'-untranslated regions of eukaryotic mRNAs (1998) (44)
- Profile of microbial communities on carbonate stones of the medieval church of San Leonardo di Siponto (Italy) by Illumina-based deep sequencing (2016) (44)
- Assessment of orthologous splicing isoforms in human and mouse orthologous genes (2010) (42)
- CSTminer: a web tool for the identification of coding and noncoding conserved sequence tags through cross-species genome comparison (2004) (42)
- Epstein-Barr virus genetic variants are associated with multiple sclerosis (2015) (42)
- Transcript mapping and genome annotation of ascidian mtDNA using EST data. (2003) (41)
- ASPicDB: a database of annotated transcript and protein variants generated by alternative splicing (2010) (41)
- Transcriptional Analysis of Acinetobacter sp. neg1 Capable of Degrading Ochratoxin A (2017) (41)
- Hypervariability of ascidian mitochondrial gene order: exposing the myth of deuterostome organelle genome stability. (2010) (41)
- TRIM8 anti-proliferative action against chemo-resistant renal cell carcinoma (2014) (40)
- The metagenomic data life-cycle: standards and best practices (2017) (40)
- The neglected genome (2012) (39)
- Inclusion of Cetaceans Within the Order Artiodactyla Based on Phylogenetic Analysis of Pancreatic Ribonuclease Genes (1999) (39)
- Genomic organization and recombinational unit duplication-driven evolution of ovine and bovine T cell receptor gamma loci (2008) (38)
- Ascidian Mitogenomics: Comparison of Evolutionary Rates in Closely Related Taxa Provides Evidence of Ongoing Speciation Events (2014) (38)
- A novel group of IncQ1 plasmids conferring multidrug resistance. (2017) (37)
- ASPIC: a novel method to predict the exon-intron structure of a gene that is optimally compatible to a set of transcript sequences (2005) (37)
- Cscan: finding common regulators of a set of genes by using a collection of genome-wide ChIP-seq datasets (2012) (36)
- The nuclear OXPHOS genes in insecta: a common evolutionary origin, a common cis-regulatory motif, a common destiny for gene duplicates (2007) (36)
- Molecular Clock and Gene Function (2003) (36)
- VDR primary targets by genome-wide transcriptional profiling (2014) (36)
- Genome Sequencing of Multiple Isolates Highlights Subtelomeric Genomic Diversity within Fusarium fujikuroi (2015) (35)
- Computational identification of protein coding potential of conserved sequence tags through cross-species evolutionary analysis. (2003) (35)
- Using REDItools to Detect RNA Editing Events in NGS Datasets (2015) (34)
- Geographic Population Structure in Epstein-Barr Virus Revealed by Comparative Genomics (2016) (34)
- Evolutionary analysis of the nucleus-encoded subunits of mammalian cytochrome c oxidase. (1991) (33)
- Energy biogenesis: one key for coordinating two genomes. (2005) (33)
- Huntingtin gene evolution in Chordata and its peculiar features in the ascidian Ciona genus (2006) (33)
- RNentropy: an entropy-based tool for the detection of significant variation of gene expression across multiple RNA-Seq experiments (2018) (33)
- Comparative genomics suggests limited variability and similar evolutionary patterns between major clades of SARS-CoV-2 (2020) (32)
- BioVeL: a virtual laboratory for data analysis and modelling in biodiversity science and ecology (2016) (32)
- Human Endometrial Microbiota at Term of Normal Pregnancies (2019) (31)
- Selection of relevant genes in cancer diagnosis based on their prediction accuracy (2007) (31)
- Stochastic models of molecular evolution and the estimation of phylogeny and rates of nucleotide substitution in the hominoid primates (1989) (31)
- ASPIC: a web resource for alternative splicing prediction and transcript isoforms characterization (2006) (31)
- The mitochondrial genome of Phallusia mammillata and Phallusia fumigata (Tunicata, Ascidiacea): high genome plasticity at intra-genus level (2007) (31)
- A backtranslation method based on codon usage strategy. (1988) (31)
- EphB2 stem-related and EphA2 progression-related miRNA-based networks in progressive stages of CRC evolution: clinical significance and potential miRNA drivers (2018) (30)
- Uncovering RNA Editing Sites in Long Non-Coding RNAs (2014) (30)
- RNA editing signature during myeloid leukemia cell differentiation (2017) (29)
- Computational methods for alternative splicing prediction. (2006) (29)
- Isochore specificity of AUG initiator context of human genes (1999) (29)
- A tandemly repeated DNA family originated from SINE-related elements in the European plethodontid salamanders (Amphibia, Urodela) (1995) (28)
- Expression and genomic analyses of Camelus dromedarius T cell receptor delta (TRD) genes reveal a variable domain repertoire enlargement due to CDR3 diversification and somatic mutation. (2011) (28)
- ITSoneDB: a comprehensive collection of eukaryotic ribosomal RNA Internal Transcribed Spacer 1 (ITS1) sequences (2017) (28)
- Using Weeder, Pscan, and PscanChIP for the Discovery of Enriched Transcription Factor Binding Site Motifs in Nucleotide Sequences (2014) (27)
- Molecular evolution of mammalian aquaporin-2: further evidence that elephant shrew and aardvark join the paenungulate clade. (1997) (27)
- SVM2: an improved paired-end-based tool for the detection of small genomic structural variations using high-throughput single-genome resequencing data (2012) (26)
- Exalign: a new method for comparative analysis of exon–intron gene structures (2008) (26)
- Evolutionary Dynamics of Mammalian MRNA Untranslated Regions by Comparative Analysis of Orthologous Human, Artiodactyl and Rodent Gene Pairs (2002) (26)
- RNA editing in plants: A comprehensive survey of bioinformatics tools and databases. (2019) (26)
- ExpEdit: a webserver to explore human RNA editing in RNA-Seq experiments (2011) (26)
- An algorithm for finding conserved secondary structure motifs in unaligned RNA sequences (2008) (26)
- Diversity of hydrolases from hydrothermal vent sediments of the Levante Bay, Vulcano Island (Aeolian archipelago) identified by activity-based metagenomics and biochemical characterization of new esterases and an arabinopyranosidase (2015) (26)
- Statistical assessment of functional categories of genes deregulated in pathological conditions by using microarray data (2007) (25)
- Characterization of Bacillus cereus Group Isolates From Human Bacteremia by Whole-Genome Sequencing (2021) (25)
- New procedure for the determination of nisin in milk (1998) (25)
- Seasonal rather than spatial variability drives planktonic and benthic bacterial diversity in a microtidal lagoon and the adjacent open sea (2017) (25)
- Targeting Chemoresistant Tumors: Could TRIM Proteins-p53 Axis Be a Possible Answer? (2019) (25)
- Human access impacts biodiversity of microscopic animals in sandy beaches (2020) (25)
- Using Weeder for the Discovery of Conserved Transcription Factor Binding Sites (2006) (24)
- Targeted next-generation sequencing detects novel gene–phenotype associations and expands the mutational spectrum in cardiomyopathies (2017) (24)
- Handbook of Comparative Genomics - Principles and Methodology (2003) (23)
- A Novel Computational Strategy to Identify A-to-I RNA Editing Sites by RNA-Seq Data: De Novo Detection in Human Spinal Cord Tissue (2012) (23)
- Pilot study on circulating miRNA signature in children with obesity born small for gestational age and appropriate for gestational age (2018) (23)
- Gypsy/Ty3-like elements in the genome of the terrestrial salamanderHydromantes (Amphibia, Urodela) (1996) (23)
- REDIdb 3.0: A Comprehensive Collection of RNA Editing Events in Plant Organellar Genomes (2018) (23)
- Molecular strategies in Metazoan genomic evolution. (2002) (23)
- UTRdb: a specialized database of 5' and 3' untranslated regions of eukaryotic mRNAs (1999) (23)
- Jellyfish summer outbreaks as bacterial vectors and potential hazards for marine animals and humans health? The case of Rhizostoma pulmo (Scyphozoa, Cnidaria). (2019) (22)
- Genome-Wide Analysis of Differentially Expressed Genes and Splicing Isoforms in Clear Cell Renal Cell Carcinoma (2013) (22)
- Compositional bias and mimicry toward the nonself proteome in immunodominant T cell epitopes of self and nonself antigens (2000) (22)
- Detecting Alternative Gene Structures from Spliced ESTs: A Computational Approach (2009) (22)
- Sequence analysis and compositional properties of untranslated regions of human mRNAs. (1994) (22)
- Mode of Binding of the Fur Protein to Target DNA: Negative Regulation of Iron-Controlled Gene Expression (2004) (21)
- The estimation of relative site variability among aligned homologous protein sequences (2003) (21)
- NGS-Trex: Next Generation Sequencing Transcriptome profile explorer (2012) (21)
- Comparative Genomics Reveals Early Emergence and Biased Spatiotemporal Distribution of SARS-CoV-2 (2021) (21)
- Assembly and characterization of pandemic influenza A H1N1 genome in nasopharyngeal swabs using high-throughput pyrosequencing. (2011) (20)
- Guinea pig p53 mRNA: identification of new elements in coding and untranslated regions and their functional and evolutionary implications. (1999) (20)
- Structural and evolutionary analysis of the ribosomal genes of the parasitic nematode Meloidogyne artiellia suggests its ancient origin. (2002) (20)
- GeneSyn: a tool for detecting conserved gene order across genomes. (2004) (20)
- HPC-REDItools: a novel HPC-aware tool for improved large scale RNA-editing analysis (2020) (19)
- Databases of MRNA Untranslated Regions for Metazoa (1996) (19)
- CoVaCS: a consensus variant calling system (2018) (19)
- A statistical method for detecting regions with different evolutionary dynamics in multialigned sequences. (1992) (19)
- Linguistic analysis of nucleotide sequences: algorithms for pattern recognition and analysis of codon strategy. (1996) (19)
- Deep RNA profiling identified CLOCK and molecular clock genes as pathophysiological signatures in collagen VI myopathy (2016) (19)
- Quantifying RNA Editing in Deep Transcriptome Datasets (2020) (18)
- No Change in the Mucosal Gut Microbiome is Associated With Celiac Disease-Specific Microbiome Alteration in Adult Patients (2016) (18)
- The BioVel Project: Robust phylogenetic workflows running on the GRID (2012) (18)
- Evolution of nuclearly encoded mitochondrial genes in Metazoa. (2005) (18)
- Enrichment of intestinal Lactobacillus by enhanced secretory IgA coating alters glucose homeostasis in P2rx7−/− mice (2019) (17)
- ELIXIR-IT HPC@CINECA: high performance computing resources for the bioinformatics community (2020) (17)
- YAP contributes to DNA methylation remodeling upon mouse embryonic stem cell differentiation (2020) (16)
- A Novel Additional Group II Intron Distinguishes the Mitochondrial rps3 Gene in Gymnosperms (2005) (16)
- MetaShot: an accurate workflow for taxon classification of host-associated microbiome from shotgun metagenomic data (2017) (16)
- EasyCluster: a fast and efficient gene-oriented clustering tool for large-scale transcriptome data (2009) (15)
- Detection of A-to-I RNA Editing in SARS-COV-2 (2021) (15)
- mRNA Untranslated Regions (UTRs) (2011) (15)
- IS26 mediated antimicrobial resistance gene shuffling from the chromosome to a mosaic conjugative FII plasmid. (2018) (15)
- Changes in gene expression and metabolic profile of drupes of Olea europaea L. cv Carolea in relation to maturation stage and cultivation area (2019) (15)
- Linguistic approaches to the analysis of sequence information. (1994) (15)
- Emerging Roles of TRIM8 in Health and Disease (2021) (14)
- A Differential Metabarcoding Approach to Describe Taxonomy Profiles of Bacteria and Archaea in the Saltern of Margherita di Savoia (Italy) (2020) (14)
- GeneUp: a program to select short PCR primer pairs that occur in multiple members of sequence lists. (1998) (14)
- Staphylococcus arlettae Genomics: Novel Insights on Candidate Antibiotic Resistance and Virulence Genes in an Emerging Opportunistic Pathogen (2019) (13)
- DG-CST (Disease Gene Conserved Sequence Tags), a database of human–mouse conserved elements associated to disease genes (2004) (13)
- Draft genome sequence of Sphingobium sp. strain ba1, resistant to kanamycin and nickel ions. (2014) (13)
- The Microbial Community Associated with Rhizostoma pulmo: Ecological Significance and Potential Consequences for Marine Organisms and Human Health (2020) (13)
- Identification and functional characterization of two new transcriptional variants of the human p 63 gene (2009) (13)
- The branching order of mammals: phylogenetic trees inferred from nuclear and mitochondrial molecular data. (1991) (13)
- DNA microenvironments and the molecular clock (1989) (13)
- Stem Cell Impairment at the Host-Microbiota Interface in Colorectal Cancer (2021) (13)
- Translational control of Scamper expression via a cell-specific internal ribosome entry site. (2003) (12)
- rRNA-like sequences in human mRNAs. (2002) (12)
- Microbiome composition indicate dysbiosis and lower richness in tumor breast tissues compared to healthy adjacent paired tissue, within the same women (2022) (12)
- Draft Genome Sequences of Six Listeria monocytogenes Strains Isolated from Dairy Products from a Processing Plant in Southern Italy (2014) (12)
- Regulation of the expression of CLU isoforms in endometrial proliferative diseases. (2013) (11)
- Laniakea: an open solution to provide Galaxy “on-demand” instances over heterogeneous cloud infrastructures (2018) (11)
- Time and biosequences (1993) (11)
- Transcriptomic analysis of nickel exposure in Sphingobium sp. ba1 cells using RNA-seq (2017) (11)
- From Your Nose to Your Toes: A Review of Severe Acute Respiratory Syndrome Coronavirus 2 Pandemic‒Associated Pernio (2021) (11)
- MitoNuc: a database of nuclear genes coding for mitochondrial proteins. Update 2002 (2002) (11)
- The peculiar evolution of apolipoprotein(a) in human and rhesus macaque. (1994) (11)
- GenoMiner: a tool for genome-wide search of coding and non-coding conserved sequence tags (2006) (10)
- Genome Sequencing and Comparative Analysis of Three Hanseniaspora uvarum Indigenous Wine Strains Reveal Remarkable Biotechnological Potential (2020) (10)
- Phylogenetic analyses: a brief introduction to methods and their application (2004) (10)
- A Unique, Consistent Identifier for Alternatively Spliced Transcript Variants (2009) (10)
- PIntron: a fast method for detecting the gene structure due to alternative splicing via maximal pairings of a pattern and a text (2012) (10)
- CorGAT: a tool for the functional annotation of SARS-CoV-2 genomes (2020) (10)
- The evolution of the RNase P- and RNase MRP-associated RNAs: Phylogenetic analysis and nucleotide substitution rate (1996) (10)
- Plant Health and Rhizosphere Microbiome: Effects of the Bionematicide Aphanocladium album in Tomato Plants Infested by Meloidogyne javanica (2020) (10)
- Methods for Pattern Discovery in Unaligned Biological Sequences (2001) (10)
- Ascidian Mitogenomics: Comparison of Evolutionary Rates in Closely Related Taxa Provides Evidence of Ongoing Speciation Events (2014) (9)
- Accurate discrimination of conserved coding and non-coding regions through multiple indicators of evolutionary dynamics (2009) (9)
- p53 Gene Family: Structural, Functional and Evolutionary Features (2003) (9)
- MitoNuc and MitoAln: two related databases of nuclear genes coding for mitochondrial proteins (2000) (9)
- Global immune disregulation in multiple sclerosis: from the adaptive response to the innate immunity (2000) (9)
- Draft genome sequence of Acinetobacter sp. neg1 capable of degrading ochratoxin A. (2015) (9)
- Stemness underpinning all steps of human colorectal cancer defines the core of effective therapeutic strategies (2019) (8)
- TRIM Proteins in Colorectal Cancer: TRIM8 as a Promising Therapeutic Target in Chemo Resistance (2021) (8)
- Apolipoprotein(a): A Puzzling Evolutionary Story (1997) (8)
- Evolution of thenad3-rps12 gene cluster in angiosperm mitochondria: Comparison of edited and unedited sequences (1996) (8)
- Detection of post-transcriptional RNA editing events. (2015) (8)
- MitoNuc : a database of nuclear genes encoding for mitochondrial proteins (2004) (8)
- Unbiased Taxonomic Annotation of Metagenomic Samples (2017) (8)
- Discovery of 342 putative new genes from the analysis of 5'-end-sequenced full-length-enriched cDNA human transcripts. (2005) (8)
- ASPic-GeneID: A Lightweight Pipeline for Gene Prediction and Alternative Isoforms Detection (2013) (8)
- DNAfan: a software tool for automated extraction and analysis of user-defined sequence regions (2004) (8)
- SIMD parallelization of the WORDUP algorithm for detecting statistically significant patterns in DNA sequences (1993) (8)
- Molecular classification of living organisms (1995) (8)
- Accurate quantification of bacterial abundance in metagenomic DNAs accounting for variable DNA integrity levels (2020) (8)
- Identification, molecular characterization, and tissue expression of OVCOV1 (2002) (8)
- Functional Integration of mRNA Translational Control Programs (2015) (8)
- FASTPAT: a fast and efficient algorithm for string searching in DNA sequences (1993) (7)
- A-to-I RNA editing in SARS-COV-2: real or artifact? (2020) (7)
- Evolution of the nad3-rps12 Gene Cluster in Angiosperm Mitochondria: Comparison of Edited and Unedited Sequences (1996) (7)
- Statistical assessment of discriminative features for protein-coding and non coding cross-species conserved sequence elements (2009) (7)
- WebVar: a resource for the rapid estimation of relative site variability from multiple sequence alignments (2004) (7)
- The importance of base composition in the correct assessment of genetic distance (1995) (7)
- TRIM8 Blunts the Pro-proliferative Action of ΔNp63α in a p53 Wild-Type Background (2019) (7)
- Genomic Surveillance of Circulating SARS-CoV-2 in South East Italy: A One-Year Retrospective Genetic Study (2021) (7)
- No metagenomic evidence of tumorigenic viruses in cancers from a selected cohort of immunosuppressed subjects (2019) (7)
- A-GAME: improving the assembly of pooled functional metagenomics sequence data (2018) (6)
- A platform independent RNA-Seq protocol for the detection of transcriptome complexity (2013) (6)
- Investigating Human Mitochondrial Genomes in Single Cells (2020) (6)
- Amylomaltases in Extremophilic Microorganisms (2021) (6)
- BCR/ABL1 fusion transcripts generated from alternative splicing: implications for future targeted therapies in Ph+ leukaemias. (2012) (6)
- Lineage-Specific Evolution of Echinoderm Mitochondrial ATP Synthase Subunit 8 (1997) (6)
- Evaluating the Efficiency of DNA Metabarcoding to Analyze the Diet of Hippocampus guttulatus (Teleostea: Syngnathidae) (2021) (6)
- High-Throughput Sequencing to Detect DNA-RNA Changes. (2021) (6)
- Gene electrotransfer of IL-2 and IL-12 plasmids effectively eradicated murine B16.F10 melanoma. (2021) (6)
- Genetic structure of the long-snouted seahorse, Hippocampus guttulatus, in the Central–Western Mediterranean Sea (2020) (5)
- Comparative genomics provides an operational classification system and reveals early emergence and biased spatio-temporal distribution of SARS-CoV-2 (2020) (5)
- Genome-wide identification of coding and non-coding conserved sequence tags in human and mouse genomes (2008) (5)
- Accurate detection and quantification of SARS-CoV-2 genomic and subgenomic mRNAs by ddPCR and meta-transcriptomics analysis (2021) (5)
- Using community events to increase quality and adoption of standards: the case of Bioschemas (2018) (5)
- MSA-PAD: DNA multiple sequence alignment framework based on PFAM accessed domain information (2015) (5)
- A primer on machine learning techniques for genomic applications (2021) (4)
- Corrigendum: Profiling RNA editing in human tissues: towards the inosinome Atlas (2016) (4)
- Comparative Genomics Suggests a Taxonomic Revision of the Staphylococcus cohnii Species Complex (2021) (4)
- REGULATION OF MITOCHONDRIAL TRANSCRIPTION IN RAT LIVER: DETERMINATION OF MITOCHONDRIAL TRANSCRIPTS CONCENTRATION IN ADULT AND DEVELOPING RAT (1983) (4)
- Draft Genome Sequences of Three Novel Staphylococcus arlettae Strains Isolated from a Disused Biological Safety Cabinet (2018) (4)
- Identification of tumor-associated cassette exons in human cancer through EST-based computational prediction and experimental validation (2010) (4)
- VINYL: Variant prIoritizatioN bY survivaL analysis (2020) (4)
- Exploring the RNA editing potential of RNA-Seq data by ExpEdit. (2015) (4)
- ASPicDB: a database web tool for alternative splicing analysis. (2015) (4)
- Erratum: Ascidian mitogenomics: Comparison of evolutionary rates in closely related taxa provides evidence of ongoing speciation events (Genome Biology and Evolution 6:3 (591-605) DOI: 10.1093/gbe/evu041) (2014) (4)
- Phylogenetic relationships of discoglossid frogs ( Amphibia : Anura : Discoglossidae ) based on complete mitochondrial genomes and nuclear genes Diego San Mauro (2004) (4)
- Critical assessment of bioinformatics methods for the characterization of pathological repeat expansions with single-molecule sequencing data (2019) (4)
- Recommendations for connecting molecular sequence and biodiversity research infrastructures through ELIXIR (2021) (4)
- A Machine Learning Approach to Parkinson’s Disease Blood Transcriptomics (2022) (4)
- A Method to Detect Gene Structure and Alternative Splice Sites by Agreeing ESTs to a Genomic Sequence (2003) (3)
- Platelets from patients with visceral obesity promote colon cancer growth (2022) (3)
- MetaCOXI: an integrated collection of metazoan mitochondrial cytochrome oxidase subunit-I DNA sequences (2022) (3)
- Bioinformatics Resources for RNA Editing. (2021) (3)
- The Evolution of Mitochondrially Coded Cytochrome Genes: A Quantitative Estimate (1987) (3)
- ODESSA: A high performance analysis pipeline for Ultra Deep targeted Exome Sequencing data (2014) (3)
- ITSoneDB: a specialized ITS1 database for amplicon-based metagenomic characterization of environmental fungal communities (2012) (3)
- Farnesoid X receptor activation by the novel agonist TC-100 (3α, 7α, 11β-Trihydroxy-6α-ethyl-5β-cholan-24-oic Acid) preserves the intestinal barrier integrity and promotes intestinal microbial reshaping in a mouse model of obstructed bile acid flow. (2022) (3)
- Time and biosequences: a contribution to the origin of modern man (1992) (3)
- Management at the service of research: ReOmicS, a quality management system for omics sciences (2019) (2)
- A new parallel algorithm for computation of statistically significant patterns in DNA sequences (1993) (2)
- Metabolic framework of spontaneous and synthetic sourdough metacommunities to reveal microbial players responsible for resilience and performance (2022) (2)
- EasyCluster2: an improved tool for clustering and assembling long transcriptome reads (2014) (2)
- Upregulation of YKL-40 Promotes Metastatic Phenotype and Correlates with Poor Prognosis and Therapy Response in Patients with Colorectal Cancer (2022) (2)
- Identification of an Amylomaltase from the Halophilic Archaeon Haloquadratum walsbyi by Functional Metagenomics: Structural and Functional Insights (2022) (2)
- Good laboratory practices and L.I.M.S. system: the challenge for a Next Generation Sequencing and bioinformatic research laboratory (2017) (2)
- Clustering and Assembling Large Transcriptome Datasets by EasyCluster2 (2013) (2)
- Abstract IA06: Identification of tumor-associated cassette exons in human cancer through exon-array and RNA-Seq data analysis. (2012) (2)
- Data sharing in the Covid-19 era: challenges and opportunities for Italy. The contribution of ELIXIR (2020) (2)
- An improved procedure for clustering and assembly of large transcriptome data (2012) (2)
- Bioinformatics approaches and tools for metagenomic analysis. Editorial. (2012) (2)
- 5′‐UTRs and Regulation (2007) (2)
- A high performance grid-web service framework for the identification of 'conserved sequence tags' (2007) (2)
- Building an optimized pipeline for whole-exome sequencing (2012) (1)
- Classification error as a measure of gene relevance in cancer diagnosis (2006) (1)
- Evaluating DNA metabarcoding to analyze diet composition of wild long-snouted seahorse Hippocampus guttulatus (2021) (1)
- IVaCS: an Integrated Variant Calling System (2016) (1)
- Ascan: a novel method for the study of allele specific expression in single individuals. (2021) (1)
- WEP: a high-performance analysis pipeline for whole-exome data (2013) (1)
- Machine Learning Data Analysis Highlights the Role of Parasutterella and Alloprevotella in Autism Spectrum Disorders (2022) (1)
- Shelf-life extension of leavened bakery products by using bio-protective cultures and type-III sourdough (2023) (1)
- P.09.7: Mucosal GUT Microbiota Composition in Patients with HCV Infection, from Chronic Hepatitis to Hepatocellular Carcinoma (2017) (1)
- WEP: an high-performance analysis pipeline for whole-exome sequencing data (2013) (1)
- The reversible stationary markov process for estimating the pattern of nucleotide substitution: A response to Ziheng Yang (1995) (1)
- Hmga2 protein loss alters nuclear envelope and 3D chromatin structure (2022) (1)
- The LIBI Grid Platform an International Laboratory for Bioinformatics (2008) (1)
- Databases for RNA Editing Collections. (2021) (1)
- CLUSTERING mtDNA SEQUENCES FOR HUMAN EVOLUTION STUDIES (2002) (1)
- MERGE: a software package for generating a single data-base starting from EMBL and GenBank collections. (1988) (1)
- Mitochondrial DNA evolution: facts and fantasy (1995) (1)
- NGS-Trex: Next Generation Sequencing Transcriptome profile explorer (2013) (1)
- Biological Databases in the Genomic Era (2005) (1)
- Natural and after colon washing fecal samples: the two sides of the coin for investigating the human gut microbiome (2021) (1)
- Rate variation in nucleotide substitutions among sites of the D-loop region of humans (1995) (1)
- VID22 counteracts G-quadruplex-induced genome instability (2021) (1)
- Predicting conserved hairpin motifs in unaligned RNA sequences (2003) (1)
- HT-RLS: High-Throughput Web Tool for Analysis of DNA Microarray Data Using RLS classifiers (2008) (1)
- A guideline for the annotation of UTR regulatory elements in the UTRsite collection. (2015) (1)
- PIntron: a fast method for detecting the gene structure due to alternative splicing via maximal pairings of a pattern and a text (2012) (1)
- DNA Multiple Sequence Alignment Guided by Protein Domains: The MSA-PAD 2.0 Method. (2018) (1)
- The future of food and nutrition in ELIXIR (2022) (1)
- ErratumErratum to “Structural and evolutionary analysis of the ribosomal genes of the parasitic nematode Meloidogyne artiellia suggests its ancient origin”: [Mol Biochem Parasitol 2002; 124: 91–94] (2003) (1)
- Direct evidence that restriction endonucleases may under estimate the degree of divergence between molecules (1990) (1)
- Corrigendum: No Change in the Mucosal Gut Microbiome is Associated with Celiac Disease-Specific Microbiome Alteration in Adult Patients (2017) (1)
- A new strategy to identify novel genes and gene isoforms: Analysis of human chromosomes 15, 21 and 22. (2006) (1)
- A platform independent RNA-Seq protocol for the detection of transcriptome complexity (2013) (1)
- UTRdb 2.0: a comprehensive, expert curated catalog of eukaryotic mRNAs untranslated regions (2022) (1)
- RNA Editing: Methods and Protocols (2021) (1)
- Transcriptome assembly and alternative splicing analysis. (2015) (1)
- Extension of the shelf-life of fresh pasta using modified atmosphere packaging and bioprotective cultures (2022) (0)
- T Follicular Helper Cells P romote a Beneficial Gut Ecosystem for Host Metabolic Homeostasis by Sensing Microbiota-Derived Extracellular ATP Graphical (2017) (0)
- Pattern Discovery on Large Scale Genomic Data (2002) (0)
- Aquatic microbiome diversity under the influence of jellyfish bloom through the application of an Illumina-based protocol (2013) (0)
- ITSoneWB: profiling global taxonomic diversity of eukaryotic communities on Galaxy (2021) (0)
- Dealing with the promise of metabarcoding in mega-event biomonitoring: EXPO2015 unedited data (2022) (0)
- Functional and structural annotation of human protein variants originated from alternative splicing in human (2010) (0)
- Unsupervised classification of SARS-CoV-2 genomic sequences uncovers hidden genetic diversity and suggests an efficient strategy for genomic surveillance (2021) (0)
- RAP: A Web Tool for RNA-Seq Data Analysis. (2021) (0)
- P.26 COL6A genes transcriptomic by RNAseq and fluidic card tools (2017) (0)
- Massive transcriptome sequencing of human spinal cord tissues provides new insights into motor neuron degeneration in ALS (2017) (0)
- Laniakea@ReCaS: first year of activity of a Laniakea-based Galaxy “on-demand” service. (2021) (0)
- More is better, different is helpful : MitoZoa database improvements and the usage of mitochondrial gene order diversity as reannotation criterion (2011) (0)
- Reditools: Efficient RNA editing detection by RNA-seq data (2013) (0)
- Metabolic framework of spontaneous and synthetic sourdough metacommunities to reveal microbial players responsible for resilience and performance (2022) (0)
- Whole transcript and alternative splicing analysis of gene expression in peripheral blood CD8+T cells from MS-discordant monozygotic twins and unrelated patients and controls (2008) (0)
- The Underestimated Role of the p53 Pathway in Renal Cancer (2022) (0)
- Cumulus Cell Transcriptome after Cumulus-Oocyte Complex Exposure to Nanomolar Cadmium in an In Vitro Animal Model of Prepubertal and Adult Age (2023) (0)
- The invasive ascidian Botryllus schlosseri: mitogenomics sequence variability as marker of intra-species variability. (2012) (0)
- SARMA: a web resource for species assignment of high-throughput sequencing reads from metagenomics analysis (2012) (0)
- Abstract 1395: Deciphering inosinome in glioblastoma versus normal cortex (2017) (0)
- Estimating the statistical significance of classifiers by varying the number of genes (2006) (0)
- Transcriptomic analysis of nickel exposure in Sphingobium sp. ba1 cells using RNA-seq (2017) (0)
- Investigating RNA editing in deep transcriptome datasets with REDItools and REDIportal (2020) (0)
- TRIM8: a new key modulator of the p53 pathway. (2012) (0)
- Finding conserved gene order across multiple genomes. (2007) (0)
- ELIXIR-IT Industry engagement: overview of the work in progress (2019) (0)
- Laniakea@ReCaS: an ELIXIR-ITALY Galaxy on-demand cloud service (2019) (0)
- Correction (1999) (0)
- Yeast as a Model to Unravel New BRCA2 Functions in Cell Metabolism (2022) (0)
- Profile of microbial communities on carbonate stones of the medieval church of San Leonardo di Siponto (Italy) by Illumina-based deep sequencing (2016) (0)
- De novo detection of A-To-I RNA editing sites in human mRNAs by massive transcriptome sequencing (2012) (0)
- Bioinformatics in Italy: BITS2006, the third annual meeting of the Italian Society of Bioinformatics (2007) (0)
- CANDLE: CRAM analysis for NGS data loss evaluation - an optimization study on compression data loss. (2012) (0)
- SpliceAid-F: a database of human splicing factors and their RNA binding sites (2012) (0)
- EasyCluster2: an improved tool for clustering and assembling long transcriptome reads (2014) (0)
- Editorial (2012) (0)
- The hidden value of human whole exome sequencing. (2012) (0)
- Dynamic inosinome profiles reveal novel patient stratification and gender-specific differences in glioblastoma (2019) (0)
- Computational Biology: annotated glossary of terms (appendix 1). (2004) (0)
- NO EVIDENCE OF MTDNA METHYLATION BY REAL-TIME DIRECT NANOPORE SEQUENCING. (2018) (0)
- Systematic and evolutionary studies in mammals: The contribution of the mitochondrial genome (1999) (0)
- A Support Vector Machine for the Discrimination of MicroRNA Precursors from Other Genomic Hairpin Structures (2007) (0)
- Spatial and temporal distribution of harmful microalgae detected with HTS metabarcoding (2016) (0)
- SVM and RLS Models for Cancer Classification (2005) (0)
- Hmga2 protein loss alters nuclear envelope and 3D chromatin structure (2022) (0)
- Molecular Biology Techniques for Genomics (2005) (0)
- Corrigendum: Genome Sequencing and Comparative Analysis of Three Hanseniaspora uvarum Indigenous Wine Strains Reveal Remarkable Biotechnological Potential (2020) (0)
- Methods for pattern discovery in unaligned biological (2001) (0)
- RAP: RNA-Seq Analysis Pipeline, a new cloud-based NGS web application (2015) (0)
- Characterization and analysis of the expressionpattern of microRNAs in the grapevine Vitisvinifera (2008) (0)
- Whole exome sequencing in a family with dominant Bethlem myopathy and no mutations in the ColVI genes. (2011) (0)
- HaploCoV: unsupervised classification and rapid detection of novel emerging variants of SARS-CoV-2 (2023) (0)
- Assessment of Hippocampus guttulatus diet using DNA metabarcoding of faeces (2022) (0)
- MitoZoa : a curated database of mitochondrial genomes of Metazoa specifically developed for genomics and phylogenetic analyses (2009) (0)
- Glutamine synthetase geneevolution: A goodmolecular clock (1991) (0)
- Laniakea – Update 2021 (2021) (0)
- Morphological, molecular, and biochemical study of cyanobacteria from a eutrophic Algerian reservoir (Cheffia) (2022) (0)
- ELIXIR-Italy Laniakea: results and future perspectives (2020) (0)
- New Tools for Expression Alternative Splicing Validation (2010) (0)
- The ELIXIR-IT Training Programme: an overview of activities, collaborations and strategies (2020) (0)
- BioMaS and MetaShot two automated pipeline for the investigation of the human microbiome (2014) (0)
- RNA Editing Detection in HPC Infrastructures. (2021) (0)
- Lactobacillus paracasei CNCM I-5220-derived postbiotic protects from the leaky-gut (2023) (0)
- Computational Methods and Bioinformatic Tools (2004) (0)
- The influence of invasive jellyfish blooms on the aquatic microbiome in a coastal lagoon (Varano, SE Italy) detected by an Illumina-based deep sequencing strategy (2014) (0)
- Compositional biases and the mitochondrial phylogeny of arthropods (2005) (0)
- CoVaCS: a consensus variant calling system (2018) (0)
- The Telethon core facility for Next Generation Sequencing Data (2011) (0)
- BioMaS: a modular pipeline for Bioinformatic analysis of Metagenomic AmpliconS (2015) (0)
- Overview of BITS2005, the Second Annual Meeting of the Italian Bioinformatics Society (2005) (0)
- ELIXIR‐IT: a growing support to national and international research in life sciences (2016) (0)
- Bioinformatics in Italy: BITS2007, the fourth annual meeting of the Italian Society of Bioinformatics (2008) (0)
- PROCEEDINGS of the XVI CONGRESS OF THE ITALIAN SOCIETY OF MYOLOGY Lecce, Italy June 8-11, 2016 (2016) (0)
- Mitogenomics unmasks split personality of Ciona intestinalis (2008) (0)
- D.P.12 Whole exome sequencing and RNAseq in a Duchenne-like female with no dystrophin mutations: Search for dystrophin gene modifiers (2012) (0)
- Changes in gene expression and metabolic profile of drupes of Olea europaea L. cv Carolea in relation to maturation stage and cultivation area (2019) (0)
- Accurate Detection of Genomic Structural Variations Using High Throughput Resequencing Data. (2011) (0)
- Computational Methods for Studying the Evolution of the Mitochondrial Genome (2004) (0)
- Enrichment of intestinal Lactobacillus by enhanced secretory IgA coating alters glucose homeostasis in P2rx7−/− mice (2019) (0)
- Human access impacts biodiversity of microscopic animals in sandy beaches (2020) (0)
- Computational Biology: Annotated Glossary of Terms (2004) (0)
- Analysis of Circulating miRNAs in Obese Children Born Small for Gestational Age (2016) (0)
- TRIM8 restores p53 tumour suppressor function by blunting N-MYC activity in chemo-resistant tumours (2017) (0)
- Laniakea@ReCaS: exploring the potential of customisable Galaxy on-demand instances as a cloud-based service (2021) (0)
- Delving into ascidiaceans mtDNA : preliminary data from three newly completed genomes (2005) (0)
- Diversity of hydrolases from hydrothermal vent sediments of the Levante Bay, Vulcano Island (Aeolian archipelago) identified by activity-based metagenomics and biochemical characterization of new esterases and an arabinopyranosidase (2015) (0)
- Microbiome composition indicate dysbiosis and lower richness in tumor breast tissues compared to healthy adjacent paired tissue, within the same women (2022) (0)
- Recommendations for connecting molecular sequence and biodiversity research infrastructures through ELIXIR. (2021) (0)
- Appendix: URLs Cited in the Text (2005) (0)
- Computational Tools for the Discovery of Regulatory Elements in Nucleotide Sequences from Co-Regulated or Homologous Genes (2006) (0)
- GenePC and ASPIC Integrate Gene Predictions with Expressed Sequence Alignments To Predict Alternative Transcripts (2007) (0)
- Complement C3aR loss drives colorectal cancer by modulating gut microbiota (2020) (0)
- Management at the service of research: ReOmicS, a quality management system for omics sciences (2019) (0)
- Analysis of adaptation to high concentrations of nickel ions of a novel sphingobium strain by RNA-SEQ (2015) (0)
- Whole transcriptome profiling of Late-Onset Alzheimer’s Disease patients provides insights into the molecular changes involved in the disease (2018) (0)
- Induction of cell cycle arrest by the dual activity of TRIM 8 on p 53 and DNp 63 (2010) (0)
- A-GAME: improving the assembly of pooled functional metagenomics sequence data (2018) (0)
- Improved detection of intra-specific genomic structural variation using paired end high throughput resequencing data and Support Vector Machine (2011) (0)
- A new gene concept in the post genomic era. (2011) (0)
- From the molecules the history of life (1994) (0)
- Genomic analysis of conserved micro RNAs genes in Grapevine (2008) (0)
- Computational Methods for the Analysis of Genome Sequence Data (2005) (0)
- Characterization of surface layer microbial communities of anopheles gambiae complex larval habitats in Burkina Faso (2017) (0)
- Profiling RNA Editing in Single Cells. (2023) (0)
- Characterization of Epstein–Barr virus genotypes in multiple sclerosis through next generation sequencing approaches (2014) (0)
- ABS 1 ABNORMAL FETAL GROWTH ALTERS THE METABOLIC PROFILE OF EARLY HUMAN MILK (2016) (0)
- Genomics and transcriptomics of novel Sphingobium species growing at high concentration of Ni ions (2014) (0)
- Finding transcription factors with over-represented binding sites in sequences from co-regulated or co-expressed genes (2007) (0)
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