Oliver Kohlbacher
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German bioinformatician
Oliver Kohlbacher's AcademicInfluence.com Rankings
Oliver Kohlbacherbiology Degrees
Biology
#11269
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#14654
Historical Rank
Bioinformatics
#130
World Rank
#132
Historical Rank
Computational Biology
#238
World Rank
#239
Historical Rank
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Biology
Oliver Kohlbacher's Degrees
- PhD Bioinformatics University of Tübingen
Why Is Oliver Kohlbacher Influential?
(Suggest an Edit or Addition)Oliver Kohlbacher's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- Charting a dynamic DNA methylation landscape of the human genome (2013) (1149)
- Severe COVID-19 Is Marked by a Dysregulated Myeloid Cell Compartment (2020) (894)
- Visualization of omics data for systems biology (2010) (620)
- OpenMS – An open-source software framework for mass spectrometry (2008) (612)
- NRPSpredictor2—a web server for predicting NRPS adenylation domain specificity (2011) (535)
- Comprehensive Analysis of Alternative Splicing Across Tumors from 8,705 Patients (2018) (471)
- OptiType: precision HLA typing from next-generation sequencing data (2014) (461)
- Feature-Based Molecular Networking in the GNPS Analysis Environment (2019) (453)
- Sequence co-evolution gives 3D contacts and structures of protein complexes (2014) (431)
- Specificity prediction of adenylation domains in nonribosomal peptide synthetases (NRPS) using transductive support vector machines (TSVMs) (2005) (412)
- Transcriptional and Epigenetic Dynamics during Specification of Human Embryonic Stem Cells (2013) (409)
- OpenMS: a flexible open-source software platform for mass spectrometry data analysis (2016) (405)
- SARS-CoV-2-derived peptides define heterologous and COVID-19-induced T cell recognition (2020) (355)
- MultiLoc: prediction of protein subcellular localization using N-terminal targeting sequences, sequence motifs and amino acid composition (2006) (330)
- TOPP - the OpenMS proteomics pipeline (2007) (295)
- MultiLoc2: integrating phylogeny and Gene Ontology terms improves subcellular protein localization prediction (2009) (268)
- YLoc—an interpretable web server for predicting subcellular localization (2010) (263)
- Simultaneous alignment of short reads against multiple genomes (2009) (245)
- WIPI proteins: essential PtdIns3P effectors at the nascent autophagosome (2015) (233)
- Tools for Label-free Peptide Quantification (2012) (212)
- Longitudinal Multi-omics Analyses Identify Responses of Megakaryocytes, Erythroid Cells, and Plasmablasts as Hallmarks of Severe COVID-19 (2020) (205)
- From hype to reality: data science enabling personalized medicine (2018) (203)
- Photo-cross-linking and high-resolution mass spectrometry for assignment of RNA-binding sites in RNA-binding proteins (2014) (201)
- The mzIdentML Data Standard for Mass Spectrometry-Based Proteomics Results (2012) (182)
- Dissecting neural differentiation regulatory networks through epigenetic footprinting (2014) (170)
- Reentrant condensation of proteins in solution induced by multivalent counterions. (2008) (166)
- Immunoinformatics and epitope prediction in the age of genomic medicine (2015) (161)
- An automated pipeline for high-throughput label-free quantitative proteomics. (2013) (154)
- Going from where to why—interpretable prediction of protein subcellular localization (2010) (148)
- SherLoc: high-accuracy prediction of protein subcellular localization by integrating text and protein sequence data (2007) (129)
- SherLoc2: a high-accuracy hybrid method for predicting subcellular localization of proteins. (2009) (127)
- Recognizing millions of consistently unidentified spectra across hundreds of shotgun proteomics datasets (2016) (119)
- Disease severity-specific neutrophil signatures in blood transcriptomes stratify COVID-19 patients (2020) (119)
- Elucidating the evolutionary conserved DNA-binding specificities of WRKY transcription factors by molecular dynamics and in vitro binding assays (2013) (118)
- The immunopeptidomic landscape of ovarian carcinomas (2017) (116)
- BALL-rapid software prototyping in computational molecular biology (2000) (109)
- The mzTab Data Exchange Format: Communicating Mass-spectrometry-based Proteomics and Metabolomics Experimental Results to a Wider Audience* (2014) (108)
- High-Accuracy Peak Picking of Proteomics Data Using Wavelet Techniques (2005) (105)
- Universality of protein reentrant condensation in solution induced by multivalent metal ions (2010) (101)
- The antigenic landscape of multiple myeloma: mass spectrometry (re)defines targets for T-cell-based immunotherapy. (2015) (97)
- GeneTrailExpress: a web-based pipeline for the statistical evaluation of microarray experiments (2008) (92)
- Time-resolved characterization of cAMP/PKA-dependent signaling reveals that platelet inhibition is a concerted process involving multiple signaling pathways. (2014) (90)
- Interplay of pH and binding of multivalent metal ions: charge inversion and reentrant condensation in protein solutions. (2013) (88)
- Early IFN-α signatures and persistent dysfunction are distinguishing features of NK cells in severe COVID-19 (2021) (86)
- SVMHC: a server for prediction of MHC-binding peptides (2006) (86)
- Novel formulation of nonlocal electrostatics. (2004) (86)
- Genetic variation in human drug-related genes (2017) (85)
- Integrated modeling of the major events in the MHC class I antigen processing pathway (2005) (80)
- Modeling metabolic networks in C. glutamicum: a comparison of rate laws in combination with various parameter optimization strategies (2009) (80)
- Statistical learning of peptide retention behavior in chromatographic separations: a new kernel-based approach for computational proteomics (2007) (80)
- MetaRoute: fast search for relevant metabolic routes for interactive network navigation and visualization (2008) (78)
- Multi-omics discovery of exome-derived neoantigens in hepatocellular carcinoma (2019) (78)
- Prediction of dual protein targeting to plant organelles. (2009) (77)
- Absolute myoglobin quantitation in serum by combining two-dimensional liquid chromatography-electrospray ionization mass spectrometry and novel data analysis algorithms. (2006) (76)
- OpenMS - A platform for reproducible analysis of mass spectrometry data. (2017) (74)
- POPISK: T-cell reactivity prediction using support vector machines and string kernels (2011) (74)
- BALL - biochemical algorithms library 1.3 (2010) (74)
- The mzQuantML Data Standard for Mass Spectrometry–based Quantitative Studies in Proteomics* (2013) (71)
- Data Integration for Future Medicine (DIFUTURE) (2018) (70)
- A combinatorial approach to protein docking with flexible side-chains (2000) (70)
- HLA Ligand Atlas: a benign reference of HLA-presented peptides to improve T-cell-based cancer immunotherapy (2021) (69)
- BALLView: a tool for research and education in molecular modeling (2006) (68)
- SANDPUMA: ensemble predictions of nonribosomal peptide chemistry reveal biosynthetic diversity across Actinobacteria (2017) (68)
- Automated Label-free Quantification of Metabolites from Liquid Chromatography–Mass Spectrometry Data* (2013) (67)
- PIA: An Intuitive Protein Inference Engine with a Web-Based User Interface. (2015) (67)
- Activation of lymphoma-associated MyD88 mutations via allostery-induced TIR-domain oligomerization. (2014) (66)
- TOPPView: an open-source viewer for mass spectrometry data. (2009) (66)
- OpenMS and TOPP: open source software for LC-MS data analysis. (2011) (65)
- BioMiner - modeling, analyzing, and visualizing biochemical pathways and networks (2002) (65)
- The MoSGrid Science Gateway - A Complete Solution for Molecular Simulations. (2014) (64)
- Plants Release Precursors of Histone Deacetylase Inhibitors to Suppress Growth of Competitors[OPEN] (2015) (64)
- Induction of neoantigen-reactive T cells from healthy donors (2019) (63)
- De novo peptide sequencing by tandem MS using complementary CID and electron transfer dissociation (2009) (63)
- Computational life sciences II (2005) (63)
- LC-MSsim – a simulation software for liquid chromatography mass spectrometry data (2008) (62)
- Copper oxide nanoparticle toxicity profiling using untargeted metabolomics (2015) (61)
- Personalized peptide vaccine-induced immune response associated with long-term survival of a metastatic cholangiocarcinoma patient (2016) (60)
- Structural and Functional Characterization of the Bacterial Type III Secretion Export Apparatus (2016) (59)
- Retention Time Prediction Improves Identification in Nontargeted Lipidomics Approaches. (2015) (59)
- A novel algorithm for detecting differentially regulated paths based on gene set enrichment analysis (2009) (57)
- Machine learning competition in immunology - Prediction of HLA class I binding peptides. (2011) (57)
- Reduced Rate of Inpatient Hospital Admissions in 18 German University Hospitals During the COVID-19 Lockdown (2021) (57)
- Electrostatic potentials of proteins in water: a structured continuum approach (2007) (56)
- BALLView: An object-oriented molecular visualization and modeling framework (2005) (55)
- BALLDock/SLICK: A New Method for Protein-Carbohydrate Docking (2008) (54)
- MetaProSIP: automated inference of stable isotope incorporation rates in proteins for functional metaproteomics. (2015) (53)
- TOPPAS: a graphical workflow editor for the analysis of high-throughput proteomics data. (2012) (52)
- OpenMS and TOPP: Open Source Software for LC-MS Data Analysis (2010) (51)
- Using Atom Mapping Rules for an Improved Detection of Relevant Routes in Weighted Metabolic Networks (2008) (50)
- Probabilistic consensus scoring improves tandem mass spectrometry peptide identification. (2011) (50)
- Distributed Analytics on Sensitive Medical Data: The Personal Health Train (2020) (50)
- Whither systems medicine? (2018) (50)
- The HLA ligandome landscape of chronic myeloid leukemia delineates novel T-cell epitopes for immunotherapy. (2018) (49)
- The role of phosphorylatable serine residues in the DNA-binding domain of Arabidopsis bZIP transcription factors. (2010) (49)
- The mzIdentML Data Standard Version 1.2, Supporting Advances in Proteome Informatics* (2017) (48)
- Computational modeling of the sugar-lectin interaction. (2004) (47)
- Mapping the HLA Ligandome of Colorectal Cancer Reveals an Imprint of Malignant Cell Transformation. (2018) (47)
- A computational platform for high-throughput analysis of RNA sequences and modifications by mass spectrometry (2018) (46)
- Designing string-of-beads vaccines with optimal spacers (2016) (46)
- A Fully Computational Model for Predicting Percutaneous Drug Absorption (2006) (46)
- In-depth analysis of protein inference algorithms using multiple search engines and well-defined metrics. (2017) (45)
- qcML: An Exchange Format for Quality Control Metrics from Mass Spectrometry Experiments* (2014) (45)
- A Single Sign-On Infrastructure for Science Gateways on a Use Case for Structural Bioinformatics (2012) (44)
- Learning from Heterogeneous Data Sources: An Application in Spatial Proteomics (2015) (44)
- BNDB – The Biochemical Network Database (2007) (43)
- Food monitoring: Screening of the geographical origin of white asparagus using FT-NIR and machine learning (2019) (43)
- Optimal de novo design of MRM experiments for rapid assay development in targeted proteomics. (2010) (42)
- Binding Pocket Optimization by Computational Protein Design (2012) (42)
- Large-scale discovery of protein interactions at residue resolution using co-evolution calculated from genomic sequences (2021) (41)
- Automated scaffold selection for enzyme design (2009) (41)
- On Open Problems in Biological Network Visualization (2009) (41)
- A Mathematical Framework for the Selection of an Optimal Set of Peptides for Epitope-Based Vaccines (2008) (41)
- Universal peptide vaccines - optimal peptide vaccine design based on viral sequence conservation. (2011) (40)
- Comparative immunopeptidomics of humans and their pathogens. (2004) (40)
- OptiTope—a web server for the selection of an optimal set of peptides for epitope-based vaccines (2009) (39)
- Novel Machine Learning Methods for MHC Class I Binding Prediction (2010) (39)
- Development of a fluorescence-based assay for screening of modulators of human organic anion transporter 1B3 (OATP1B3). (2006) (38)
- Peak intensity prediction in MALDI-TOF mass spectrometry: A machine learning study to support quantitative proteomics (2008) (37)
- Implications for selectivity of 3,4-diarylquinolinones as p38alphaMAP kinase inhibitors. (2008) (37)
- Combining Structure and Sequence Information Allows Automated Prediction of Substrate Specificities within Enzyme Families (2010) (37)
- Virtual screening and experimental validation reveal novel small-molecule inhibitors of 14-3-3 protein-protein interactions. (2013) (36)
- Epitope prediction algorithms for peptide-based vaccine design (2003) (35)
- HLA ligandome analysis of primary chronic lymphocytic leukemia (CLL) cells under lenalidomide treatment confirms the suitability of lenalidomide for combination with T-cell-based immunotherapy (2017) (35)
- BiNA: A Visual Analytics Tool for Biological Network Data (2014) (34)
- Competing salt effects on phase behavior of protein solutions: tailoring of protein interaction by the binding of multivalent ions and charge screening. (2014) (34)
- Exploiting physico-chemical properties in string kernels (2010) (33)
- BALL: Biochemical Algorithms Library (1999) (33)
- Workflows for automated downstream data analysis and visualization in large-scale computational mass spectrometry (2015) (32)
- Lectin-sugar interaction. Calculated versus experimental binding energies. (2002) (32)
- EpiToolKit—a web-based workbench for vaccine design (2015) (32)
- FRED 2: an immunoinformatics framework for Python (2016) (32)
- SLICK - Scoring and Energy Functions for Protein-Carbohydrate Interactions (2006) (31)
- BN++ – A Biological Information System (2008) (31)
- Improving peptide identification in proteome analysis by a two-dimensional retention time filtering approach. (2009) (31)
- Testing and Validation of Computational Methods for Mass Spectrometry. (2016) (31)
- Profile and molecular modeling of 3-(indole-3-yl)-4-(3,4,5-trimethoxyphenyl)-1 H-pyrrole-2,5-dione (1) as a highly selective VEGF-R2/3 inhibitor. (2006) (30)
- SARS-CoV-2 T-cell epitopes define heterologous and COVID-19-induced T-cell recognition (2020) (30)
- SNEP: SNP-derived Epitope Prediction program for minor H antigens (2005) (29)
- Significantly Improved Prediction of Subcellular Localization by Integrating Text and Protein Sequence Data (2005) (28)
- The HLA Ligand Atlas. A resource of natural HLA ligands presented on benign tissues (2019) (28)
- In melanoma, Hippo signaling is affected by copy number alterations and YAP1 overexpression impairs patient survival (2014) (27)
- A Combinatorial Approach to Protein Docking with Flexible Side Chains (2002) (27)
- LFQProfiler and RNP(xl): Open-Source Tools for Label-Free Quantification and Protein-RNA Cross-Linking Integrated into Proteome Discoverer. (2016) (27)
- MHCquant: Automated and reproducible data analysis for immunopeptidomics. (2019) (26)
- Multiple Instance Learning Allows MHC Class II Epitope Predictions Across Alleles (2008) (26)
- FRED—a framework for T-cell epitope detection (2009) (26)
- Scaling home automation to public buildings: A distributed multiuser setup for OpenHAB 2 (2017) (26)
- EpiToolKit—a web server for computational immunomics (2008) (26)
- Erratum to “Personalized peptide vaccine-induced immune response associated with long-term survival of a metastatic cholangiocarcinoma patient” (2016) (25)
- From sequence to structure and back again: approaches for predicting protein-DNA binding (2004) (25)
- The MoSGrid - e-science gateway: molecular simulations in a distributed computing environment (2013) (25)
- Toward Increased Reliability, Transparency, and Accessibility in Cross-linking Mass Spectrometry. (2020) (25)
- KIRMES: kernel-based identification of regulatory modules in euchromatic sequences (2009) (24)
- Analysis of protein-RNA interactions in CRISPR proteins and effector complexes by UV-induced cross-linking and mass spectrometry. (2015) (24)
- Towards in silico design of epitope-based vaccines (2009) (23)
- DNA-binding proteins from marine bacteria expand the known sequence diversity of TALE-like repeats (2015) (23)
- Food Authentication: Small-Molecule Profiling as a Tool for the Geographic Discrimination of German White Asparagus. (2018) (23)
- Machine learning identifies ICU outcome predictors in a multicenter COVID-19 cohort (2021) (22)
- Improving global feature detectabilities through scan range splitting for untargeted metabolomics by high-performance liquid chromatography-Orbitrap mass spectrometry. (2016) (22)
- A proteomics sample metadata representation for multiomics integration and big data analysis (2021) (22)
- Identification of Pparγ-modulated miRNA hubs that target the fibrotic tumor microenvironment (2019) (22)
- Computational proteomics pitfalls and challenges: HavanaBioinfo 2012 workshop report. (2013) (21)
- Analysis of Genomic DNA from Medieval Plague Victims Suggests Long-Term Effect of Yersinia pestis on Human Immunity Genes (2021) (21)
- Structure-activity relationships in chromatography: retention prediction of oligonucleotides with support vector regression. (2006) (21)
- No Longer Confidential: Estimating the Confidence of Individual Regression Predictions (2012) (21)
- qPortal: A platform for data-driven biomedical research (2018) (20)
- Untargeted Metabolomics Reveals Molecular Effects of Ketogenic Diet on Healthy and Tumor Xenograft Mouse Models (2019) (20)
- Structure prediction of protein complexes by an NMR-based protein docking algorithm (2001) (20)
- Application of displacement chromatography for the proteome analysis of a human plasma protein fraction. (2010) (20)
- A statistical learning approach to the modeling of chromatographic retention of oligonucleotides incorporating sequence and secondary structure data (2007) (19)
- Carfilzomib alters the HLA-presented peptidome of myeloma cells and impairs presentation of peptides with aromatic C-termini (2016) (19)
- Distinct transcriptional changes in non-small cell lung cancer patients associated with multi-antigenic RNActive® CV9201 immunotherapy (2016) (18)
- Comparison of different sample preparation techniques for NIR screening and their influence on the geographical origin determination of almonds (Prunus dulcis MILL.) (2020) (18)
- Annotation and initial evaluation of a large annotated German oncological corpus (2021) (18)
- Covalent attachment of pyridoxal-phosphate derivatives to 14-3-3 proteins (2012) (17)
- An unusually high substitution rate in transplant-associated BK polyomavirus in vivo is further concentrated in HLA-C-bound viral peptides (2018) (17)
- Data Management of Sensitive Human Proteomics Data: Current Practices, Recommendations, and Perspectives for the Future (2021) (17)
- Analysis of protein-DNA interactions in chromatin by UV induced cross-linking and mass spectrometry (2020) (16)
- Fluorescence-based imaging of autophagy progression by human WIPI protein detection. (2015) (16)
- From the desktop to the grid: scalable bioinformatics via workflow conversion (2016) (16)
- Population-specific design of de-immunized protein biotherapeutics (2017) (16)
- The bifunctional role of aconitase in Streptomyces viridochromogenes Tü494. (2012) (15)
- FLASHDeconv: Ultrafast, High-Quality Feature Deconvolution for Top-Down Proteomics. (2020) (15)
- Special Issue: Portals for life sciences—Providing intuitive access to bioinformatic tools (2011) (15)
- The future of metabolomics in ELIXIR. (2017) (15)
- Mass-Spectrometry-Based Proteomics Reveals Organ-Specific Expression Patterns To Be Used as Forensic Evidence. (2016) (15)
- Algorithms for the Automated Absolute Quantification of Diagnostic Markers in Complex Proteomics Samples (2005) (14)
- The future of metabolomics in ELIXIR (2017) (14)
- Challenges of big data integration in the life sciences (2019) (14)
- Identification of HCMV-derived T cell epitopes in seropositive individuals through viral deletion models (2019) (14)
- EPIFANY – A method for efficient high-confidence protein inference (2019) (14)
- Protein (multi-)location prediction: utilizing interdependencies via a generative model (2015) (14)
- Food authentication: Determination of the geographical origin of almonds (Prunus dulcis Mill.) via near-infrared spectroscopy (2021) (13)
- KIRMES: kernel-based identification of regulatory modules in euchromatic sequences (2009) (13)
- From the Desktop to the Grid: conversion of KNIME Workflows to gUSE (2013) (13)
- Multiple layers of phospho-regulation coordinate metabolism and the cell cycle in budding yeast (2019) (13)
- CADDSuite – a workflow-enabled suite of open-source tools for drug discovery (2012) (13)
- The Endometrial Transcription Landscape of MRKH Syndrome (2020) (12)
- Genome-wide study of a Neolithic Wartberg grave community reveals distinct HLA variation and hunter-gatherer ancestry (2021) (12)
- Ballaxy: Web Services for Structural Bioinformatics (2015) (12)
- Determination of the Geographical Origin of Asparagus officinalis L. by 1H NMR Spectroscopy. (2020) (12)
- Clinical and non-targeted metabolomic profiling of homozygous carriers of Transcription Factor 7-like 2 variant rs7903146 (2014) (12)
- DIAproteomics: A Multifunctional Data Analysis Pipeline for Data-Independent Acquisition Proteomics and Peptidomics. (2021) (11)
- SmartPeak Automates Targeted and Quantitative Metabolomics Data Processing. (2020) (11)
- A community proposal to integrate proteomics activities in ELIXIR (2017) (11)
- A Data Driven Science Gateway for Computational Workflows (2012) (11)
- Granular Security for a Science Gateway in Structural Bioinformatics (2011) (11)
- Food fingerprinting: Mass spectrometric determination of the cocoa shell content (Theobroma cacao L.) in cocoa products by HPLC-QTOF-MS. (2019) (11)
- A meta-analysis of HLA peptidome composition in different hematological entities: entity-specific dividing lines and “pan-leukemia” antigens (2017) (10)
- In silico design of targeted SRM-based experiments (2012) (10)
- Visualization challenges for a new cyber-pharmaceutical computing paradigm (2001) (10)
- A branch and cut algorithm for the optimal solution of the side-chain placement problem (2000) (10)
- Nephron Toxicity Profiling via Untargeted Metabolome Analysis Employing a High Performance Liquid Chromatography-Mass Spectrometry-based Experimental and Computational Pipeline* (2015) (10)
- Displacement chromatography as first separating step in online two-dimensional liquid chromatography coupled to mass spectrometry analysis of a complex protein sample--the proteome of neutrophils. (2012) (10)
- 31st Annual Meeting and Associated Programs of the Society for Immunotherapy of Cancer (SITC 2016): part one (2016) (10)
- DrugTargetInspector: An assistance tool for patient treatment stratification (2016) (10)
- Multivariate Networks in the Life Sciences (2013) (10)
- Performance Studies on Distributed Virtual Screening (2014) (10)
- Integrative analysis of cancer‐related data using CAP (2004) (9)
- Characterization of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Infection Clusters Based on Integrated Genomic Surveillance, Outbreak Analysis and Contact Tracing in an Urban Setting (2021) (9)
- Blocked Inverted Indices for Exact Clustering of Large Chemical Spaces (2014) (9)
- ClinOmicsTrailbc: a visual analytics tool for breast cancer treatment stratification (2019) (9)
- Multiple Layers of Phospho-Regulation Coordinate Metabolism and the Cell Cycle in Budding Yeast (2019) (9)
- Development of a pharmacorphore model for pharmacological chaperones targeting mutant trafficking-deficient CNG channels (2013) (9)
- T-cell epitope prediction based on self-tolerance (2011) (9)
- PTMeta: Increasing identification rates of modified peptides using modification prescanning and meta‐analysis (2013) (8)
- Integer Linear Programming in Computational Biology (2009) (8)
- SLICK — Scoring and Energy Functions for Protein—Carbohydrate Interactions. (2006) (8)
- Workflow Interoperability in a Grid Portal for Molecular Simulations (2010) (8)
- Workflow-enhanced conformational analysis of guanidine zinc complexes via a science gateway (2012) (7)
- Rapid software prototyping in molecular modeling using the biochemical algorithms library (BALL) (2000) (7)
- miHA-match: computational detection of tissue-specific minor histocompatibility antigens (2012) (7)
- Tracing incorporation of heavy water into proteins for species-specific metabolic activity in complex communities. (2020) (7)
- Dithiothreitol (DTT) Acts as a Specific, UV-inducible Cross-linker in Elucidation of Protein–RNA Interactions* (2015) (7)
- Improved particle-packed HPLC/MS microchips for proteomic analysis. (2010) (7)
- DIAMetAlyzer allows automated false-discovery rate-controlled analysis for data-independent acquisition in metabolomics (2022) (6)
- Trailblazing Precision Medicine in Europe: a joint view by Genomic Medicine Sweden and the Centers for Personalized Medicine, ZPM, in Germany. (2021) (6)
- Application of displacement chromatography for the analysis of a lipid raft proteome. (2010) (6)
- Grid-Workflows in Molecular Science (2010) (6)
- Visualization of omics data for systems (2010) (6)
- SmartPeak automates targeted and quantitative metabolomics data processing (2020) (6)
- Rapid Software Prototyping in Computational Molecular Biology (1999) (6)
- Exploring protein-protein interactions at the proteome level. (2022) (5)
- 08191 Working Group Summary - Visually Comparing a Set of Graphs (2008) (5)
- Neolithic genomes reveal a distinct ancient HLA allele pool and population transformation in Europe (2019) (5)
- No evidence of viral genomes in whole‐transcriptome sequencing of three melanoma metastases (2011) (5)
- Favorable immune signature in CLL patients, defined by antigen-specific T-cell responses, might prevent second skin cancers (2018) (5)
- Metabolomics Data Processing Using OpenMS. (2020) (5)
- ImmunoNodes – graphical development of complex immunoinformatics workflows (2017) (5)
- A Universal Language for Finding Mass Spectrometry Data Patterns (2022) (5)
- Phosphoproteomics of short-term hedgehog signaling in human medulloblastoma cells (2020) (5)
- Reproducible Scientific Workflows for High Performance and Cloud Computing (2019) (5)
- Proteome-scale discovery of protein interactions with residue-level resolution using sequence coevolution (2019) (5)
- Novel Visual Metaphors for Multivariate Networks (2013) (5)
- Managing expectations when publishing tools and methods for computational proteomics. (2015) (5)
- FLASHDeconv: Ultrafast, high-quality feature deconvolution for top-down proteomics (2019) (5)
- A Science Gateway Getting Ready for Serving the International Molecular Simulation Community (2012) (5)
- Molecular simulation grid (2011) (5)
- Understanding the constitutive presentation of MHC class I immunopeptidomes in primary tissues (2022) (5)
- Identifying disease-causing mutations with privacy protection (2020) (5)
- Intuitive Web-Based Experimental Design for High-Throughput Biomedical Data (2015) (5)
- German Conference on Bioinformatics (2006) (5)
- MoSGrid – a molecular simulation grid as a new tool in computational chemistry, biology and material science (2011) (4)
- Bioinformatics for qualitative and quantitative proteomics. (2011) (4)
- MoSGrid: efficient data management and a standardized data exchange format for molecular simulations in a grid environment (2012) (4)
- Proteins and Molecular Pathways Relevant for the Malignant Properties of Tumor-Initiating Pancreatic Cancer Cells (2020) (4)
- Modeling Protein‐Protein and Protein‐DNA Docking (2008) (4)
- OpenMS for open source analysis of mass spectrometric data (2019) (4)
- User-Driven Development of a Novel Molecular Tumor Board Support Tool (2018) (4)
- A Science Gateway for Molecular Simulations (2011) (4)
- A distributed analytics platform to execute FHIR based phenotyping algorithms (2018) (4)
- A Graph-drawing Perspective to Some Open Problems in Molecular Biology (2008) (4)
- The COVID-19 Data Exchange Platform of the German University Medicine (2022) (4)
- A NMR-spectra-based scoring function for protein docking (2001) (3)
- The MoSGrid Community From National to International Scale (2012) (3)
- DIAproteomics: A multi-functional data analysis pipeline for data-independent-acquisition proteomics and peptidomics (2020) (3)
- OpenPepXL: An Open-Source Tool for Sensitive Identification of Cross-Linked Peptides in XL-MS (2020) (3)
- The HLA Ligand Atlas: A novel immuno-oncology resource for T-cell antigen discovery. (2020) (3)
- Using N-terminal targeting sequences, amino acid composition, and sequence motifs for predicting protein subcellular localizations (2005) (3)
- Genetic authentication: Differentiation of hazelnut cultivars using polymorphic sites of the chloroplast genome (2021) (3)
- Computational Life Sciences, First International Symposium, CompLife 2005, Konstanz, Germany, September 25-27, 2005, Proceedings (2005) (3)
- Rebuilding KEGG Maps: Algorithms and Benefits (2014) (3)
- Enabling ad-hoc reuse of private data repositories through schema extraction (2020) (3)
- ClinVAP: a reporting strategy from variants to therapeutic options (2019) (3)
- Cross-linking of the endolysosomal system reveals potential flotillin structures and cargo (2022) (3)
- Interpretation of the DOME Recommendations for Machine Learning in Proteomics and Metabolomics (2022) (3)
- Towards Increased Reliability, Transparency and Accessibility in Crosslinking Mass Spectrometry (2020) (3)
- Differenzielle Proteomanalyse – Experimentelle Methoden, algorithmische Herausforderungen (Differential Analysis in Proteomics: Experimental Methods, Algorithmic Challenges) (2004) (2)
- A computational platform for high-throughput analysis of RNA sequences and modifications by mass spectrometry (2020) (2)
- Differential Enzymatic 16O/18O Labeling for the Detection of Cross-Linked Nucleic Acid-Protein Heteroconjugates. (2017) (2)
- miHA-Match: computational detection of tissue-specific minor histocompatibility antigens. (2012) (2)
- Analysis of MHC-Peptide Binding Using Amino Acid Property-Based Decision Rules (2005) (2)
- Abstract B124: Personalized peptide vaccination based on patient-individual tumor-specific variants induces T-cell responses in pediatric patients (2019) (2)
- Induction of neoantigen-reactive T cells from healthy donors (2019) (2)
- De novo identification of maximally deregulated subnetworks based on multi-omics data with DeRegNet (2021) (2)
- OpenMS - A Framework for Quantitative HPLC/MS-Based Proteomics (2006) (2)
- Visualization Challenges for a New Cyberpharmaceutical Computing (2001) (2)
- FLASHIda enables intelligent data acquisition for top–down proteomics to boost proteoform identification counts (2022) (2)
- „Metabolomics“ in der Diabetesforschung (2012) (2)
- High-accuracy peak picking of proteomics data (2005) (2)
- Comparison of displacement versus gradient mode for separation of a complex protein mixture by anion-exchange chromatography. (2012) (2)
- Interactive Visualization for Large-Scale Multi-factorial Research Designs (2018) (2)
- Computational modeling of the sugarlectin interaction (2004) (2)
- The de.NBI / ELIXIR-DE training platform - Bioinformatics training in Germany and across Europe within ELIXIR. (2019) (2)
- New approaches to protein docking (2000) (2)
- Minor deviations from randomness have huge repercussions on the functional structuring of sequence space (2019) (2)
- MoSGrid: Progress of Workflow driven Chemical Simulations (2011) (2)
- iVacALL: utilizing next-generation sequencing for the establishment of an individual peptide vaccination approach for paediatric acute lymphoblastic leukaemia (2013) (2)
- BALL – A Framework for Rapid Application Development in Molecular Modeling (2001) (2)
- Investigating the Sugar-Lectin Interaction by Computational Chemistry: Tunneling the Epithelial Barrier (1998) (2)
- Population Genetics and Signatures of Selection in Early Neolithic European Farmers (2022) (2)
- Patient Empowerment During the COVID-19 Pandemic by Ensuring Safe and Fast Communication of Test Results: Implementation and Performance of a Tracking System (2021) (2)
- Structural Glycomics – Molecular Details of Protein-Carbohydrate Interactions and their Prediction (2010) (2)
- A Statistical Comparison of SimTandem with State-of-the-Art Peptide Identification Tools (2013) (2)
- Modeling the Sugar Lectin Interaction by Computational Chemistry Relevant to Drug Design (2000) (1)
- Metabolites from Liquid Chromatography-Mass Spectrometry Data (2014) (1)
- Containerization and wrapping of a mass spectra prediction workflow (2016) (1)
- POLAR – „POLypharmazie, Arzneimittelwechselwirkungen und Risiken“ – wie können Daten aus der stationären Krankenversorgung zur Beurteilung beitragen? (2022) (1)
- Graphlet Data Mining of Energetical Interaction Patterns in Protein 3D Structures (2018) (1)
- 05471 Executive Summary - Computational Proteomics (2005) (1)
- In silico design of targeted SRM-based experiments (2012) (1)
- Network-based interactive navigation and analysis of large biological datasets (2015) (1)
- Visualization challenges for a new cyberpharmaceutical computing paradigm (2001) (1)
- Bioinformatics: Use of Physico-Chemical Properties in Peptide and Protein Identification (2008) (1)
- Generic User Management for Science Gateways via Virtual Organizations (2012) (1)
- Data Integration for Future Medicine (DIFUTURE) An Architectural and Methodological Overview (2018) (1)
- Rebuilding KEGG Maps - An integrative approach for visual analytics of metabolic networks (2014) (1)
- The future of metabolomics in ELIXIR [version 1; peer review: 2 approved, 1 approved with reservations] (2021) (1)
- Multi-omics discovery of exome-derived neoantigens in hepatocellular carcinoma (2019) (1)
- The de.NBI / ELIXIR-DE training platform - Bioinformatics training in Germany and across Europe within ELIXIR (2019) (1)
- Where Natural Protein Sequences Stand out From Randomness (2019) (1)
- Graph Drawing with Applications to Bioinformatics and Social Sciences 3 Social Networks from a Graph Drawing Perspective (2008) (1)
- CHAPTER 6. OpenMS and KNIME for Mass Spectrometry Data Processing (2020) (1)
- The future of metabolomics in ELIXIR [ version 2 ; peer review : 3 approved ] (2021) (1)
- The Global Architecture Shaping the Heterogeneity and Tissue-Dependency of the MHC Class I Immunopeptidome is Evolutionarily Conserved (2020) (1)
- 08191 Executive Summary - Graph Drawing with Applications to Bioinformatics and Social Sciences (2008) (1)
- Efficient Mass Spectra Prediction through Container Orchestration with a Scientific Workflow (2017) (1)
- Copper oxide nanoparticle toxicity profiling using untargeted metabolomics (2015) (1)
- Number of predicted tumour-neoantigens as biomarker for cancer immunotherapies. (2017) (1)
- Abstract CT057: Phase I trial to evaluate the feasibility and safety of an individualized peptide vaccine of unmodified cancer antigens: PepIVAC-01 (2018) (1)
- qPortal - A science gateway for biomedical applications (2017) (1)
- On Comparison of SimTandem with State-of-the-Art Peptide Identification Tools, Efficiency of Precursor Mass Filter and Dealing with Variable Modifications (2013) (1)
- Optimized neoantigen selection based on tumor exome data (2016) (1)
- Bioinformatics Support for Mass Spectrometry Quality Control (2008) (1)
- Rescoring of docking poses using force field-based methods (2010) (1)
- Efficient privacy-preserving whole-genome variant queries (2022) (1)
- Genomdaten FAIR und sicher teilen: Das Deutsche Humangenom-Phänom Archiv (GHGA) als Baustein der Nationalen Forschungsdateninfrastruktur (2021) (1)
- Finding Relevant Biotransformation Routes in Weighted Metabolic Networks (2007) (1)
- FLASHIda: Intelligent data acquisition for top-down proteomics that doubles proteoform level identification count (2021) (0)
- 11th German Conference on Chemoinformatics (GCC 2015) (2016) (0)
- Identifikation und präklinische Charakterisierung neuartiger epigenetischer Wirkstoffe zur Behandlung therapieresistenter Tumore am Beispiel des Hepatozellulären Karzinoms (2009) (0)
- A machine learning approach for the prediction of DNA and peptide HPLC retention times (extended abstract) (2006) (0)
- Metadata Correction: Patient Empowerment During the COVID-19 Pandemic by Ensuring Safe and Fast Communication of Test Results: Implementation and Performance of a Tracking System (2021) (0)
- Patient Empowerment During the COVID-19 Pandemic by Ensuring Safe and Fast Communication of Test Results: Implementation and Performance of a Tracking System (Preprint) (2021) (0)
- Visually Comparing a Set of Graphs Dagstuhl Seminar 08191 Working Group Summary (2008) (0)
- German Conference on Bioinformatics GCB 2006, 19.09. 2006 - 22.09. 2006 in Tübingen, Germany (2006) (0)
- Untargeted Metabolomics as Profiling Tool for Nanotoxicity of Copper Oxide Nanoparticles in Lung Epithelial Cells (2015) (0)
- BALL-SNPgp - from genetic variants toward computational diagnostics (2016) (0)
- Resource Transcriptional and Epigenetic Dynamics during Specification of Human Embryonic Stem Cells (2013) (0)
- Comparative Visual Analysis of Molecular Dynamics (2022) (0)
- Studies on COVID-19 lethality: Causes and dynamics at German University Hospitals (2021) (0)
- Integration of HILIC and RP separations with HRMS for comprehensive metabolomics in nanoparticle-exposed lung tissue cells (2014) (0)
- In-depth Analysis of Protein Inference Algorithms using a Workflow Framework and Well-Defined Metrics (2017) (0)
- A framework and workflow system for virtual screening and molecular docking (2011) (0)
- From the desktop to the grid: scalable bioinformatics via workflow conversion (2016) (0)
- De novo identification of maximally deregulated subnetworks based on multi-omics data with DeRegNet (2022) (0)
- Analysis of mass spectrometry data using sub- spectra and wavelets (2007) (0)
- Mayer-Rokitansky-Küster-Hauser Syndrome: Interrogation of Genetic Pathology and Novel Surgical Intervention Methods (2020) (0)
- Metabolomics – eine Strategie zur Identifizierung von prä-diabetischen Stoffwechselveränderungen und neuen Biomarkern? (2009) (0)
- OpenMS - A Software Platform for Shotgun Proteomics (2006) (0)
- Proceedings of the Second international conference on Computational Life Sciences (2005) (0)
- Interplay Between the Immune System and Colorectal Carcinoma - Towards Tumor-Specific Peptide-Based Vaccination for Any HLA-Type (2015) (0)
- Computational Mass Spectrometry (Dagstuhl Seminar 13491) (2013) (0)
- Genetic variation in human drug-related genes (2017) (0)
- SARS-CoV-2-derived peptides define heterologous and COVID-19-induced T cell recognition (2020) (0)
- BIOINF 4371 Drug Design 1 (2011) (0)
- Computational Proteomics, 20.-25. November 2005 (2006) (0)
- Global Analysis of the Mammalian MHC class I Immunopeptidome at the Organism-Wide Scale (2020) (0)
- Abstract analysis of pathways using the BN++ software framework (2007) (0)
- A Molecular Simulation Grid as new tool for Computational Chemistry, Biology and Material Science (2011) (0)
- Deterministic clustering of the available chemical space (2013) (0)
- Mit Bioinformatik zu Biomarkern (2012) (0)
- Portals for Life Sciences - a Brief Introduction (2009) (0)
- Prediction of Percutaneous Drug Absorption (2006) (0)
- MultiLoc 2 and SherLoc 2 : improved prediction of subcellular protein localization (2009) (0)
- Genome Sequencing and Transcriptome Profiling in Twins Discordant for Mayer-Rokitansky-Küster-Hauser Syndrome (2022) (0)
- Entwicklung, Charakterisierung und Evaluierung neuartiger auf Naturstoffen basierender Histondeacetylase-Inhibitoren für die Therapie solider Tumore (2012) (0)
- A Computational Pipeline for High-Throughput T-Cell Epitope Prediction (2003) (0)
- Evaluation of LC-MS data for the absolute quantitative analysis of marker proteins (2005) (0)
- Reference methods and materials in standardisation and quality assurance(abstract) (2005) (0)
- Corrigendum to Tracing incorporation of heavy water into proteins for species-specific metabolic activity in complex communities. (2020) (0)
- Structure-based prediction of transcription factor-DNA binding free energies using MM/GBSA (2003) (0)
- The HLA ligandome of oropharyngeal squamous cell carcinomas reveals shared tumour-exclusive peptides for semi-personalised vaccination (2023) (0)
- Challenges in Large-Scale Computational Mass Spectrometry and Multiomics. (2016) (0)
- Calculated versus experimental binding energies (2002) (0)
- DNA-binding proteins from marine bacteria expand the sequence diversity of known TALE-like repeats (2015) (0)
- Small-molecule inhibitors of 14-3-3 protein-protein interactions from virtual screening (2013) (0)
- 08101 Executive Summary and Abstracts Collection Computational Proteomics (2008) (0)
- Designing string-of-beads vaccines with optimal spacers (2016) (0)
- 08101 Abstracts Collection - Computational Proteomics (2008) (0)
- Abstract A113: iVacALL: A personalized peptide-vaccination design platform for pediatric acute lymphoblastic leukemia patients based on patient-individual tumor-specific variants (2016) (0)
- 08191 Abstracts Collection - Graph Drawing with Applications to Bioinformatics and Social Sciences (2008) (0)
- BALLDock/SLICK: A New Method for Protein-Carbohydrate Docking. (2008) (0)
- Cross-linking of the Endolysosomal System Reveals Flotillin Structures and Putative Cargo (2022) (0)
- A machine learning approach for prediction of DNA and peptide retention times (2005) (0)
- ec 2 00 2 Using nonlocal electrostatics for solvation free energy computations : ions and small molecules (2002) (0)
- Computational Mass Spectrometry (Dagstuhl Seminar 15351) (2015) (0)
- Differential Proteome Analysis of Tumor-initiating Cells (2011) (0)
- Unique Alterations in the Immunopeptidome of Colorectal Cancer Reflect Specific Transformations in Cancer-Associated Signaling Pathways and Reveal Tumor-Specific HLA-Ligand Modulations (2016) (0)
- DIAMetAlyzer allows automated false-discovery rate-controlled analysis for data-independent acquisition in metabolomics (2022) (0)
- 05471 Abstract Collection - Computational Proteomics (2005) (0)
- Supporting Advances in Proteome Informatics*□S (2020) (0)
- Immunoinformatics and epitope prediction in the age of genomic medicine (2015) (0)
- Clinical outcome of biomarker-guided therapies in adult patients with tumors of the nervous system (2023) (0)
- An innovative approach for HLA typing, molecular tumor testing and the validation of tumor exclusive antigens (2020) (0)
- OpenPepXL: An Open-Source Tool for Sensitive Identification of Cross-Linked Peptides in XL-MS. (2020) (0)
- TOPP goes Rapid The OpenMS Proteomics Pipeline in a Grid-Enabled Web Portal (2010) (0)
- Neonatal apnea and hypopnea prediction in infants with Robin sequence with neural additive models for time series (2023) (0)
- Report from Dagstuhl Seminar 13491 Computational Mass Spectrometry (2014) (0)
- Differential analysis of toxicity effects of nanomaterials with HPLC-MS/MS using computational proteomics (2014) (0)
- From the Desktop to the Grid and Cloud: Conversion of KNIME Workflows to WS-PGRADE (2016) (0)
- Using nonlocal electrostatics for solvation free energy computations: ions and small molecules (2002) (0)
- Patient empowerment during the COVID-19 pandemic: Ensuring safe and fast communication of test results. (2021) (0)
- Technique de prediction de liaison peptide-proteine (2003) (0)
- Biological Network Knowledge in Molecular Tumor Boards (2019) (0)
- PREDICT-juvenile-stroke: PRospective evaluation of a prediction score determining individual clinical outcome three months after ischemic stroke in young adults – a study protocol (2023) (0)
- Mass Deconvolution of Top-Down Mass Spectrometry Datasets by FLASHDeconv. (2022) (0)
- Sequence analysis MultiLoc : prediction of protein subcellular localization using N-terminal targeting sequences , sequence motifs and amino acid composition (2006) (0)
- Genetic variation in human drug-related genes you. (2017) (0)
- Abstract A112: Mapping the impact of proteasome inhibitor therapy on the antigenic landscape of multiple myeloma: Identifying robust targets for T cell immunotherapy (2016) (0)
- Metadata Correction: Patient Empowerment During the COVID-19 Pandemic by Ensuring Safe and Fast Communication of Test Results: Implementation and Performance of a Tracking System (Preprint) (2021) (0)
- Genome-wide study of a Neolithic Wartberg grave community reveals distinct HLA variation and hunter-gatherer ancestry (2021) (0)
- Untargeted Metabolomics for Toxicity Profiling in Human Kidney Cells using HPLC-ESI-MS and Direct-Infusion Nano-ESI-MS (2013) (0)
- An Architectural and Methodological Overview (2018) (0)
- Phosphoproteomics of short-term hedgehog signaling in human medulloblastoma cells (2020) (0)
- Struktur‐Aktivitäts‐Beziehungen in der Chromatographie: Retentionsvorhersage für Oligonucleotide mit Supportvektorregression (2006) (0)
- Genome sequencing and transcriptome profiling in twins discordant for Mayer-Rokitansky-Kuester-Hauser syndrome (2022) (0)
- A Single Sign-On Infrastructure for Science Gateways on a Use Case for Structural Bioinformatics (2012) (0)
- BOOTABLE: Bioinformatics Benchmark Tool Suite (2019) (0)
- The personalized cancer network explorer (PeCaX) as a visual analytics tool to support molecular tumor boards (2021) (0)
- Highlights from the Fifth International Society for Computational Biology ( ISCB ) Student Council Symposium (2009) (0)
- Metabolic Effects of ZnO Nano Particle Exposure on A459 Alveolar Carcinoma Cells Determined by Reversed Phase LC, HILIC and Gas Chromatography with Mass Spectrometric Detection (2013) (0)
- Identification of Proteins and Molecular Pathways Regulating Tumor-Initiating Pancreatic Cancer Stem Cells Employing Proteomics and Transcriptomics (2015) (0)
- IWSG 2015 Organizing Committee (2015) (0)
- Poster abstracts of the 25th German Conference on Bioinformatics (2017) (0)
- The HLA Ligandome Landscape of Chronic Myeloid Leukemia Delineates Novel T-Cell Epitopes for Immunotherapy (2018) (0)
- 4 Multivariate Networks in the Life Sciences (0)
- Combining Omics: A holistic Strategy for Metastasis Target Identification (2013) (0)
- Differenzielle Proteomanalyse -- Experimentelle Methoden, AlgorithmischeHerausforderungen (2004) (0)
- On Comparison of SimTandem with State-of-the-Art Peptide Identification Tools, Efficiency of Precursor Mass Filter and Dealing with Variable Modifications (2013) (0)
- A secure and rapid query-software for COVID-19 test results that can easily be integrated into the clinical workflow to avoid communication overload (2020) (0)
- Enabling ad-hoc reuse of private data repositories through schema extraction (2020) (0)
- Towardsin silicodesignof epitope-basedvaccines (2009) (0)
- Bringing the Algorithms to the Data - Secure Distributed Medical Analytics using the Personal Health Train (PHT-meDIC) (2022) (0)
- Differential Proteome Analysis of Pancreatic Cancer Stem Cells (2012) (0)
- ImmunoNodes – graphical development of complex immunoinformatics workflows (2017) (0)
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What Schools Are Affiliated With Oliver Kohlbacher?
Oliver Kohlbacher is affiliated with the following schools:
