Ruriko Yoshida | Academic Influence

Ruriko Yoshida's AcademicInfluence.com Rankings

Ruriko Yoshida

Mathematics

#3963

World Rank

#5722

Historical Rank

Probability Theory

#172

World Rank

#202

Historical Rank

Group Theory

#265

World Rank

#312

Historical Rank

Algebra

#403

World Rank

#554

Historical Rank

mathematics Degrees

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Mathematics

Ruriko Yoshida's Degrees

PhD Mathematics University of Tokyo
Masters Statistics Stanford University
Bachelors Mathematics University of Tokyo

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Why Is Ruriko Yoshida Influential?

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According to Wikipedia, Ruriko Yoshida is a Japanese-American mathematician and statistician whose research topics have ranged from abstract mathematical problems in algebraic combinatorics to optimized camera placement in sensor networks and the phylogenomics of fungi. She works at the Naval Postgraduate School in Monterey, California as a professor of operations research. She was promoted as a rank of professor on July 1st 2023.

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Ruriko Yoshida's Published Works

Number of citations in a given year to any of this author's works

Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author

Published Works

Plant-Symbiotic Fungi as Chemical Engineers: Multi-Genome Analysis of the Clavicipitaceae Reveals Dynamics of Alkaloid Loci (2013) (350)
Effective lattice point counting in rational convex polytopes (2004) (303)
Short rational functions for toric algebra and applications (2003) (67)
Approximate Techniques in Solving Optimal Camera Placement Problems (2011) (64)
On connectivity of fibers with positive marginals in multiple logistic regression (2008) (47)
Kdetrees: Non-parametric Estimation of Phylogenetic Tree Distributions (2013) (47)
A generating function for all semi-magic squares and the volume of the Birkhoff polytope (2007) (44)
Tropical Principal Component Analysis and Its Application to Phylogenetics (2017) (43)
Convexity in Tree Spaces (2015) (40)
On the optimality of the neighbor-joining algorithm (2007) (40)
Indispensable monomials of toric ideals and Markov bases (2005) (37)
Beyond pairwise distances: neighbor-joining with phylogenetic diversity estimates. (2006) (35)
Principal component analysis and the locus of the Fréchet mean in the space of phylogenetic trees (2016) (31)
Optimality of the Neighbor Joining Algorithm and Faces of the Balanced Minimum Evolution Polytope (2010) (29)
Efficiencies of the NJp, Maximum Likelihood, and Bayesian Methods of Phylogenetic Construction for Compositional and Noncompositional Genes. (2016) (25)
Tropical Fermat-Weber Points (2016) (25)
Markov bases and subbases for bounded contingency tables (2009) (21)
MATHEMATICAL ENGINEERING TECHNICAL REPORTS Markov Bases for Two-way Subtable Sum Problems (2007) (21)
A generalization of the integer linear infeasibility problem (2006) (19)
Computing holes in semi-groups and its applications to transportation problems (2006) (19)
Tropical Foundations for Probability & Statistics on Phylogenetic Tree Space (2018) (18)
Tropical Geometry of Phylogenetic Tree Space: A Statistical Perspective (2018) (18)
A computational study of integer programming algorithms based on Barvinok's rational functions (2005) (16)
Tropical principal component analysis on the space of phylogenetic trees (2020) (16)
Three Kinds of Integer Programming Algorithms Based on Barvinok's Rational Functions (2004) (16)
Bayes estimators for phylogenetic reconstruction (2009) (15)
Experiments with the Site Frequency Spectrum (2011) (15)
First steps toward the geometry of cophylogeny (2008) (15)
Normalizing Kernels in the Billera-Holmes-Vogtmann Treespace (2015) (14)
Multilocus phylogenetic analysis with gene tree clustering (2015) (14)
A Markov basis for conditional test of common diagonal effect in quasi-independence model for square contingency tables (2008) (13)
Algebraic and Geometric Methods in Statistics: Markov chains, quotient ideals and connectivity with positive margins (2009) (12)
A support vector machine based test for incongruence between sets of trees in tree space (2012) (11)
Semigroups and sequential importance sampling for multiway tables and beyond (2011) (10)
Livestock Evacuation Planning for Natural and Man-made Emergencies (2013) (10)
Statistical Phylogenetic Tree Analysis Using Differences of Means (2010) (10)
Saturation points on faces of a rational polyhedral cone (2006) (9)
Tropical Support Vector Machine and its Applications to Phylogenomics (2020) (8)
Effective lattice point counting in rational convex (2004) (8)
Counting Tables Using the Double-Saddlepoint Approximation (2009) (8)
Maximum likelihood estimation of phylogenetic tree and substitution rates via generalized neighbor-joining and the EM algorithm (2005) (8)
Degree Bounds for a Minimal Markov Basis for the Three-State Toric Homogeneous Markov Chain Model (2011) (7)
On the enumeration of certain weighted graphs (2006) (7)
Phylogenetic Tree Distances (2016) (7)
Algebraic Statistics for Computational Biology: Applications of Interval Methods to Phylogenetics (2005) (7)
Barvinok's rational functions: algorithms and applications to optimization, statistics, and algebra (2004) (7)
The Geometry of the Neighbor-Joining Algorithm for Small Trees (2008) (6)
Computing holes in semi-groups (2006) (6)
Markov degree of the three-state toric homogeneous Markov chain model (2012) (5)
Nonparametric Estimation of Phylogenetic Tree Distributions (2013) (5)
Tropical Support Vector Machines: Evaluations and Extension to Function Spaces (2021) (5)
Holes in Semigroups and Their Applications to the Two-way Common Diagonal Effect Model (2008) (5)
Phylogenetic Tree Reconstruction: Geometric Approaches (2013) (5)
Using HPC for teaching and learning bioinformatics software: Benefits and challenges (2013) (4)
Neighbor Joining with Subtree Weights (2004) (4)
Hybrid schemes for exact conditional inference in discrete exponential families (2018) (4)
Short rational generating functions and their applications to integer programming (2005) (4)
Formulas for the volumes of the polytope of doubly-stochastic matrices and its faces (2007) (4)
Neighbor joining with phylogenetic diversity estimates (2005) (4)
Open Problems on Connectivity of Fibers with Positive Margins in Multi-dimensional Contingency Tables (2010) (3)
Tropical Geometric Variation of Tree Shapes (2020) (3)
Reconstructing the Phylogeny: Computational Methods (2015) (3)
Tree Topologies along a Tropical Line Segment (2021) (3)
Semigroups – A computational approach (2016) (3)
Estimating the number of zero-one multi-way tables via sequential importance sampling (2011) (2)
Tropical principal component analysis on the space of ultrametrics (2019) (2)
imPhy: Imputing Phylogenetic Trees with Missing Information Using Mathematical Programming (2020) (2)
Tropical Data Science over the Space of Phylogenetic Trees (2021) (2)
Phylotree – a toolkit for computing experiments with distance-based methods for genome coevolution (2010) (2)
Coalescent experiments II: Markov bases of classical population genetic statistics (2009) (2)
Estimating Tropical Principal Components Using Metropolis Hasting Algorithm (2018) (2)
Hit and Run Sampling from Tropically Convex Sets (2022) (2)
Linear Algebra and Its Applications with R (2021) (2)
Tropical Balls and Its Applications to K Nearest Neighbor over the Space of Phylogenetic Trees (2021) (2)
Tropical Geometric Variation of Phylogenetic Tree Shapes (2020) (2)
The characteristic imset polytope for diagnosis models (2012) (1)
Systems of Linear Equations and Matrices (2021) (1)
A support vector machine based test for incongruence between sets of trees in tree space (2012) (1)
CURatio: Genome-Wide Phylogenomic Analysis Method Using Ratios of Total Branch Lengths (2020) (1)
Distributions of topological tree metrics between a species tree and a gene tree (2015) (1)
The Characteristic Imset Polytope of Bayesian Networks with Ordered Nodes (2012) (1)
Partitioning the Sample Space on Five Taxa for the Neighbor Joining Algorithm (2007) (1)
Tropical Density Estimation of Phylogenetic Trees (2022) (1)
Extremal positive semidefinite matrices whose sparsity pattern is given by graphs without K5 minors (2016) (1)
“ Old Wine in New Bottles , ” and Some More New Wine – Stephen Fienberg ’ s Influence on Algebraic Statistics (2019) (1)
Fundamental holes and saturation points of a commutative semigroup and their applications to contingency tables (2006) (1)
SARS-CoV-2 Dissemination Using a Network of the US Counties (2022) (1)
Statistical analysis on detecting recombination sites in DNA-beta satellites associated with the old world geminiviruses (2010) (1)
Tropical Data Science (2020) (1)
Extremal Positive Semidefinite Matrices for Graphs without $K_5$ Minors (2015) (1)
Solving Reward-Collecting Problems with UAVs: A Comparison of Online Optimization and Q-Learning (2021) (0)
Using HPC for teaching and learning bioinformatics software: Benefits and challenges (2013) (0)
Multilocus phylogenetic analysis with gene tree clustering (2017) (0)
SARS-CoV-2 Dissemination using a Network of the United States Counties (2021) (0)
Extremal Positive Semidefinite Matrices for Weakly Bipartite Graphs (2015) (0)
Phylogenetic Analysis and Molecular Evolution (PAME) (2021) (0)
Maximum Inscribed and Minimum Enclosing Tropical Balls of Tropical Polytopes and Applications to Volume Estimation and Uniform Sampling (2023) (0)
Normality of the three-state toric homogeneous Markov chain model (2012) (0)
Markov degree of the three-state toric homogeneous Markov chain model (2013) (0)
Network Similarity Using Distribution of Distance Matrices (2018) (0)
Datasets for CURatio (2018) (0)
Network Analysis (2021) (0)
Statistical Analysis on Detecting Recombination Sites in DNA-β Satellites Associated with Old World Geminiviruses (2010) (0)
Sequential Importance Sampling for Logistic Regression Model (2019) (0)
Plücker coordinates of the best-fit Stiefel tropical linear space to a mixture of Gaussian distributions (2021) (0)
Hybrid schemes for exact conditional inference in discrete exponential families (2017) (0)
Stephen Fienberg's influence on algebraic statistics (2019) (0)
MATHEMATICAL ENGINEERING TECHNICAL REPORTS Computing holes in semi-groups (2006) (0)
Stochastic Safety Radius on UPGMA (2022) (0)
Vector Spaces (2021) (0)
Stochastic safety radius on Neighbor-Joining method and Balanced Minimal Evolution on small trees (2015) (0)
Parametric k-best alignment (2008) (0)
Linear Regression (2021) (0)
Matrix Arithmetic (2021) (0)
Inner Product Space (2021) (0)
Hybrid Methods for Running MCMC over I × J × K Contingency Tables (2022) (0)
Distributions of topological tree metrics between a species tree and a gene tree (2016) (0)
Network Classification with Missing Information (2021) (0)
Tropical Principal Component Analysis and Its Application to Phylogenetics (2018) (0)
ALGORITHMS FOR RECONSTRUCTING PHYLOGENETIC TREES FROM DISSIMILARITY MAPS (2003) (0)
Appendix for “Convexity on treespaces” (2017) (0)
Connecting Tables with Allowing Negative Cell Counts (2022) (0)
Linear Programming (2021) (0)
Estimating the number of zero-one multi-way tables via sequential importance sampling (2012) (0)
Solving Reward-Collecting Problems with UAVs: A Comparison of Online Optimization and Q-Learning (2022) (0)

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What Schools Are Affiliated With Ruriko Yoshida?

Ruriko Yoshida is affiliated with the following schools: