Suzanna Lewis | Academic Influence

Suzanna Lewis's AcademicInfluence.com Rankings

Suzanna Lewis

Biology

#1905

World Rank

#3084

Historical Rank

#893

USA Rank

Bioinformatics

#93

World Rank

#95

Historical Rank

#14

USA Rank

Computational Biology

#334

World Rank

#335

Historical Rank

#41

USA Rank

biology Degrees

Suzanna Lewis

Computer Science

#4827

World Rank

#5094

Historical Rank

#1511

USA Rank

Database

#4183

World Rank

#4351

Historical Rank

#682

USA Rank

computer-science Degrees

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Biology
Computer Science

Suzanna Lewis's Degrees

PhD Bioinformatics University of California, Berkeley
Masters Computer Science Stanford University
Bachelors Computer Science Stanford University

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Why Is Suzanna Lewis Influential?

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According to Wikipedia, Suzanna E. Lewis was a scientist and Principal investigator at the Berkeley Bioinformatics Open-source Project based at Lawrence Berkeley National Laboratory until her retirement in 2019. Lewis led the development of open standards and software for genome annotation and ontologies.

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Suzanna Lewis's Published Works

Number of citations in a given year to any of this author's works

Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author

Published Works

Gene Ontology: tool for the unification of biology (2000) (34828)
The genome sequence of Drosophila melanogaster. (2000) (6125)
The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration (2007) (2558)
Gene Ontology Consortium: The Gene Ontology (GO) database and informatics resource (2004) (2444)
AmiGO: online access to ontology and annotation data (2008) (1558)
The Gene Ontology Resource: 20 years and still GOing strong (2019) (1467)
Reactome: a knowledgebase of biological pathways (2004) (1353)
The minimum information about a genome sequence (MIGS) specification (2008) (1344)
The generic genome browser: a building block for a model organism system database. (2002) (1223)
Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE (2010) (1211)
Reactome knowledgebase of human biological pathways and processes (2008) (981)
Integrative Analysis of the Caenorhabditis elegans Genome by the modENCODE Project (2010) (931)
The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data (2013) (789)
The Sequence Ontology: a tool for the unification of genome annotations (2005) (788)
The Gene Ontology project in 2008 (2007) (741)
Systematic determination of patterns of gene expression during Drosophila embryogenesis (2002) (727)
Reactome: a knowledge base of biologic pathways and processes (2007) (667)
PANTHER version 7: improved phylogenetic trees, orthologs and collaboration with the Gene Ontology Consortium (2009) (583)
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium (2011) (579)
The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective (2002) (558)
Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project (2008) (543)
Uberon, an integrative multi-species anatomy ontology (2012) (542)
JBrowse: a dynamic web platform for genome visualization and analysis (2016) (540)
Comparative Genome and Proteome Analysis of Anopheles gambiae and Drosophila melanogaster (2002) (536)
Gene Ontology Annotations and Resources (2012) (503)
The Gene Ontology in 2010: extensions and refinements (2009) (449)
The Gene Ontology Consortium (2000) (419)
Annotation of the Drosophila melanogaster euchromatic genome: a systematic review (2002) (376)
EGASP: the human ENCODE Genome Annotation Assessment Project (2006) (344)
Web Apollo: a web-based genomic annotation editing platform (2013) (319)
Linking Human Diseases to Animal Models Using Ontology-Based Phenotype Annotation (2009) (311)
Integrating phenotype ontologies across multiple species (2010) (305)
Improved exome prioritization of disease genes through cross-species phenotype comparison (2014) (300)
OBO-Edit - an ontology editor for biologists (2007) (293)
Finding Our Way through Phenotypes (2015) (284)
The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species (2016) (269)
An exploration of the sequence of a 2.9-Mb region of the genome of Drosophila melanogaster: the Adh region. (1999) (246)
The environment ontology: contextualising biological and biomedical entities (2013) (244)
The FlyBase database of the Drosophila Genome Projects and community literature. (2002) (230)
Genome annotation assessment in Drosophila melanogaster. (2000) (230)
Effective diagnosis of genetic disease by computational phenotype analysis of the disease-associated genome (2014) (221)
The Gene Ontology: enhancements for 2011 (2011) (211)
The Human Phenotype Ontology: Semantic Unification of Common and Rare Disease (2015) (195)
Standardized benchmarking in the quest for orthologs (2016) (184)
Standardized benchmarking in the quest for orthologs (2016) (184)
A Whole-Genome Analysis Framework for Effective Identification of Pathogenic Regulatory Variants in Mendelian Disease. (2016) (183)
National Center for Biomedical Ontology: advancing biomedicine through structured organization of scientific knowledge. (2006) (182)
Calling on a million minds for community annotation in WikiProteins (2008) (163)
The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation (2016) (149)
The Gene Ontology's Reference Genome Project: A Unified Framework for Functional Annotation across Species (2009) (147)
modMine: flexible access to modENCODE data (2011) (144)
MSAViewer: interactive JavaScript visualization of multiple sequence alignments (2016) (138)
On ontologies for biologists: the Gene Ontology--untangling the web. (2002) (137)
The Monarch Initiative in 2019: an integrative data and analytic platform connecting phenotypes to genotypes across species (2019) (131)
Apollo: Democratizing genome annotation (2019) (129)
Deletions of chromosomal regulatory boundaries are associated with congenital disease (2014) (128)
PhenoDigm: analyzing curated annotations to associate animal models with human diseases (2013) (126)
Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon (2014) (118)
A short study on the success of the Gene Ontology (2004) (114)
Standardized description of scientific evidence using the Evidence Ontology (ECO) (2014) (107)
Gene Ontology: looking backwards and forwards (2004) (104)
On the Use of Gene Ontology Annotations to Assess Functional Similarity among Orthologs and Paralogs: A Short Report (2012) (102)
Survey-based naming conventions for use in OBO Foundry ontology development (2009) (94)
Ontology annotation: mapping genomic regions to biological function. (2007) (91)
Joining forces in the quest for orthologs (2009) (91)
Entity/quality-based logical definitions for the human skeletal phenome using PATO (2009) (88)
Construction and accessibility of a cross-species phenotype ontology along with gene annotations for biomedical research. (2013) (85)
Large-Scale Trends in the Evolution of Gene Structures within 11 Animal Genomes (2006) (84)
The RNA Ontology Consortium: an open invitation to the RNA community. (2006) (78)
Towards BioDBcore: a community-defined information specification for biological databases (2011) (71)
MouseFinder: Candidate disease genes from mouse phenotype data (2012) (67)
Navigating the Phenotype Frontier: The Monarch Initiative (2016) (64)
The Genome Knowledgebase: a resource for biologists and bioinformaticists. (2003) (63)
Apollo: a community resource for genome annotation editing (2009) (57)
modENCODE Project Genome by the Caenorhabditis elegans Integrative Analysis of the (2011) (57)
Gene Ontology Causal Activity Modeling (GO-CAM) moves beyond GO annotations to structured descriptions of biological functions and systems (2019) (57)
Towards BioDBcore: a community-defined information specification for biological databases (2010) (57)
The Confidence Information Ontology: a step towards a standard for asserting confidence in annotations (2015) (54)
An Evaluation of Ontology Exchange Languages for Bioinformatics (2000) (49)
Phenotypic overlap in the contribution of individual genes to CNV pathogenicity revealed by cross-species computational analysis of single-gene mutations in humans, mice and zebrafish (2012) (47)
Sequence Ontology Annotation Guide (2004) (45)
Assessment of genome-wide protein function classification for Drosophila melanogaster. (2003) (45)
Novel sequence feature variant type analysis of the HLA genetic association in systemic sclerosis. (2010) (40)
Use of Model Organism and Disease Databases to Support Matchmaking for Human Disease Gene Discovery (2015) (38)
Uberon: towards a comprehensive multi-species anatomy ontology (2009) (36)
Modelling data across labs, genomes, space and time (2006) (36)
OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies (2021) (36)
The modENCODE Data Coordination Center: lessons in harvesting comprehensive experimental details (2011) (34)
Ontologies for biologists: a community model for the annotation of genomic data. (2003) (32)
Model organism data evolving in support of translational medicine (2018) (31)
Gearing up to handle the mosaic nature of life in the quest for orthologs (2017) (31)
Best practice data life cycle approaches for the life sciences (2017) (27)
Disease insights through cross-species phenotype comparisons (2015) (27)
BioJS: an open source standard for biological visualisation – its status in 2014 (2014) (27)
Construction and accessibility of a cross-species phenotype ontology along with gene annotations for biomedical research (2013) (26)
The Gene Ontology’s Reference Genome Project: A Unified Framework for Functional Annotation across Species (2009) (26)
Quest for Orthologs Entails Quest for Tree of Life: In Search of the Gene Stream (2015) (25)
Anatomy of BioJS, an open source community for the life sciences (2015) (25)
Emerging semantics to link phenotype and environment (2015) (21)
Towards naming conventions for use in controlled vocabulary and ontology engineering (2009) (20)
Continuous Integration of Open Biological Ontology Libraries (2012) (17)
Large-scale inference of gene function through phylogenetic annotation of Gene Ontology terms: case study of the apoptosis and autophagy cellular processes (2016) (17)
Correction: Reactome: a knowledge base of biologic pathways and processes (2009) (15)
The influence of disease categories on gene candidate predictions from model organism phenotypes (2014) (15)
Best practice data life cycle approaches for the life sciences. (2017) (15)
Uberon, an integrative multi-species anatomy (2012) (15)
The Vision and Challenges of the Gene Ontology. (2017) (15)
An Introduction to the Reactome Knowledgebase of Human Biological Pathways and Processes (2007) (14)
Ten Years of Collaborative Progress in the Quest for Orthologs (2021) (12)
A knowledge based approach to matching human neurodegenerative disease and animal models (2013) (11)
Gene Ontology: a controlled vocabulary to describe the function, biological process and cellular location of gene products in genome databases (1999) (11)
Use of animal models for exome prioritization of rare disease genes (2014) (10)
The transposable elements of the Drosophila melanogaster (2002) (10)
Invariance (?) of Mutational Parameters for Relative Fitness Over 400 Generations of Mutation Accumulation in Caenorhabditis elegans (2012) (10)
Data Management for Genomic Mapping Applications: A Case Study (1992) (9)
Assessing the effectiveness of knowledge-based interventions in increasing skin cancer awareness, knowledge, and protective behaviors in skin of color populations. (2017) (8)
Coxsackie Eruption Arising in Areas of Epidermolytic Ichthyosis (2015) (8)
Reactome - a knowledgebase of human biological pathways (2007) (6)
Drosophila melanogaster Genome Annotation Assessment in Material Supplemental (2000) (6)
The Environment Ontology – Linking Environmental Data (2009) (5)
Real‐world drug survival and reasons for treatment discontinuation of biologics and apremilast in patients with psoriasis in an academic center (2021) (5)
Using Drosophila melanogaster to test the effect of multiple introductions on the ability of a non-native population to adapt to novel environments (2011) (3)
Towards richer descriptions of our collection of genomes andmetagenomes (2006) (3)
Wrestling with SUMO and bio-ontologies (2006) (3)
Sequence Ontology annotation guide: Conference Papers (2004) (3)
Reactome: An integrated expert model of human molecular processes and access toolkit (2007) (3)
Semantic linking of phenotypes and environments (2015) (2)
Assessing Skin Biopsy Rates for Histologic Findings Indicative of Nonpathological Cutaneous Disease (2019) (2)
Sequence Ontology annotation guide : Comparative and Functional Genomics (2004) (2)
The Monarch Initiative: Insights across species reveal human disease mechanisms (2016) (2)
NLP and Phenotypes: using Ontologies to link Human Diseases to Animal Models (2008) (2)
The BioJS: an open source standard for biological visualisation (2014) (1)
Graft-vs-host Disease and Toxic Epidermal Necrolysis Following Hematopoietic Stem Cell Transplantation. (2022) (1)
Phenotype Ontology Research Coordination Network meeting report: creating a community network for comparing and leveraging phenotype-genotype knowledge across species (2012) (1)
Web Apollo: a web-based genomic annotation editing platform (2013) (1)
Deletions of chromosomal regulatory boundaries are associated with congenital disease (2014) (1)
Uberon, an integrative multi-species anatomy ontology (2012) (1)
EGASP: the human ENCODE Genome Annotation Assessment (2015) (1)
Identification of Transcription Factor LIN-15B::GFP Binding Regions in L3 (2011) (1)
Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon (2014) (1)
Identification of Transcription Factor GEI-1::GFP Binding Regions in L4 (2011) (1)
Sequence analysis MSAViewer: interactive JavaScript visualization of multiple sequence alignments (2016) (1)
Identification of Transcription Factor EGL-27::GFP Binding Regions in L1 (2011) (1)
The influence of disease categories on gene candidate predictions from model organism phenotypes (2014) (1)
owlcollab/owltools: 2020-04-06 (2020) (1)
Methodphenotype ontologies across multiple species (2010) (1)
The environment ontology: contextualising biological and biomedical entities (2013) (1)
Quest for Orthologs ( QfO ) entails Quest for Tree of Life ( QfToL ) : in Search of the Gene Stream (2015) (1)
Does Transparency Matter? The Impact of Provider Quality and Cost Information on Health Care Cost and Preventive Services Use (2019) (1)
Supporting curation communities and collecting technical dividends. (2017) (0)
Organism System Database The Generic Genome Browser: A Building Block for a Model (2006) (0)
Lawrence Berkeley National Laboratory Recent Work Title Gene Ontology Causal Activity (2019) (0)
The palaeoenvironments and fire history of the Hoxnian (MIS 11) interglacial. (2009) (0)
JBrowse: a dynamic web platform for genome visualization and analysis (2016) (0)
Outline of the Alliance of Genome Resources (2017) (0)
Identification of Transcription Factor CEH-30::GFP Binding Regions in Late Embyros (2011) (0)
Efficient curation of genome annotations through collaboration with Apollo (2019) (0)
Data : The Benchmark Sequence : The Adh Region in D . melanogaster (0)
Finding Our Way Through Phenotypes (2019) (0)
E-GEOD-25798.processed.2.zip (2011) (0)
Navigating the research data life cycle (2016) (0)
Finding Our Way Thr ough Phenotypes (2015) (0)
Apollo: collaborative and scalable manual genome annotation (2017) (0)
Disease insights through cross-species phenotype comparisons (2015) (0)
E-GEOD-25798.additional.1.zip (2011) (0)
Gene Ontology Causal Activity Modeling (GO-CAM) moves beyond GO annotations to structured descriptions of biological functions and systems (2019) (0)
Planteome: ontology-based services for querying and mining plant genomic and phenomic data (2017) (0)
Lawrence Berkeley National Laboratory Recent Work Title JBrowse : A dynamic web platform for genome visualization and analysis (2016) (0)
The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation (2016) (0)
Lawrence Berkeley National Laboratory Recent Work Title The environment ontology in 2016 : Bridging domains with increased scope , semantic density , and interoperation Permalink (2016) (0)
Model organism data evolving in support of translational medicine (2018) (0)
E-GEOD-25800.processed.1.zip (2011) (0)
Tools for exploring mouse models of human disease (2016) (0)
Examples of interesting observations from this project (2011) (0)
Identification of Transcription Factor MEP-1::GFP Binding Regions in Embryos (2011) (0)
Genome computing at Lawrence Berkeley Laboratory (1991) (0)
Apollo: collaborative manual annotation for genomic sequencing projects (2016) (0)
Using ontologies to define the relation between neurodegenerative disease and associated animal model phenotypes (1970) (0)
Perspective Finding Our Way through Phenotypes (2014) (0)
Aberystwyth Uberon, an integrative multi-species anatomy ontology (2012) (0)
BioJS 2.0: an open source standard for biological visualization (2015) (0)
The Monarch Initiative and phenopackets wrapped (2016) (0)
Erratum: An exploration of the sequence of a 2.9-Mb region of the genome of Drosophila melanogaster. The Adh region (Genetics 153 (179-219)) (1999) (0)
Aberystwyth University Integrating phenotype ontologies across multiple species (2010) (0)
The Gene Ontology Annotation database ( GOA ) : A community re source of GO annotations to the UniProt Knowledgebase (2005) (0)

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What Schools Are Affiliated With Suzanna Lewis?

Suzanna Lewis is affiliated with the following schools: