Barbara Engelhardt
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Computational biologist
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Barbara Engelhardtbiology Degrees
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Computer Science Biology
Barbara Engelhardt's Degrees
- PhD Computer Science Stanford University
- Bachelors Computer Science Stanford University
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Why Is Barbara Engelhardt Influential?
(Suggest an Edit or Addition)According to Wikipedia, Barbara Elizabeth Engelhardt is an American computer scientist and specialist in bioinformatics. Working as a Professor at Stanford University, her work has focused on latent variable models, exploratory data analysis for genomic data, and QTLs. In 2021, she was awarded the Overton Prize by the International Society for Computational Biology.
Barbara Engelhardt's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- Genetic effects on gene expression across human tissues (2017) (2841)
- The GTEx Consortium atlas of genetic regulatory effects across human tissues (2019) (1609)
- Understanding mechanisms underlying human gene expression variation with RNA sequencing (2010) (1277)
- Meta-analysis of Genome-wide Association Studies for Neuroticism, and the Polygenic Association With Major Depressive Disorder. (2015) (281)
- The Human Tumor Atlas Network: Charting Tumor Transitions across Space and Time at Single-Cell Resolution (2020) (234)
- The impact of sex on gene expression across human tissues (2020) (220)
- A statin-dependent QTL for GATM expression is associated with statin-induced myopathy (2013) (206)
- Protein Molecular Function Prediction by Bayesian Phylogenomics (2005) (205)
- The impact of rare variation on gene expression across tissues (2016) (197)
- How algorithmic confounding in recommendation systems increases homogeneity and decreases utility (2017) (196)
- Normal cerebral, renal and abdominal regional oxygen saturations using near-infrared spectroscopy in preterm infants (2010) (174)
- Analysis of Population Structure: A Unifying Framework and Novel Methods Based on Sparse Factor Analysis (2010) (166)
- Meta-analysis of Genome-Wide Association Studies for Extraversion: Findings from the Genetics of Personality Consortium (2015) (164)
- Computational approaches to fMRI analysis (2017) (163)
- Integrative Modeling of eQTLs and Cis-Regulatory Elements Suggests Mechanisms Underlying Cell Type Specificity of eQTLs (2012) (157)
- Bayesian group factor analysis with structured sparsity (2016) (151)
- Predicting genome-wide DNA methylation using methylation marks, genomic position, and DNA regulatory elements (2013) (150)
- A Quantitative Proteome Map of the Human Body (2019) (143)
- Measuring the predictability of life outcomes with a scientific mass collaboration (2020) (134)
- A Reinforcement Learning Approach to Weaning of Mechanical Ventilation in Intensive Care Units (2017) (132)
- Co-expression networks reveal the tissue-specific regulation of transcription and splicing (2016) (131)
- Factored Planning (2003) (115)
- GPCR-specific autoantibody signatures are associated with physiological and pathological immune homeostasis (2018) (110)
- Casper: Space Exploration through Continuous Planning (2001) (105)
- Clustering gene expression time series data using an infinite Gaussian process mixture model (2017) (104)
- ASPEN-Automated Planning and Scheduling for Space Mission Operation (2000) (99)
- Short- and long-term effects of furosemide on lung function in infants with bronchopulmonary dysplasia. (1986) (78)
- Genome-Wide Association Study of d-Amphetamine Response in Healthy Volunteers Identifies Putative Associations, Including Cadherin 13 (CDH13) (2012) (77)
- Glucocorticoid receptor recruits to enhancers and drives activation by motif-directed binding (2018) (76)
- Local genetic effects on gene expression across 44 human tissues (2016) (72)
- Comparison of Safety and Efficacy of Methadone vs Morphine for Treatment of Neonatal Abstinence Syndrome: A Randomized Clinical Trial (2018) (70)
- Double-blind, placebo-controlled trial of alternate-day furosemide therapy in infants with chronic bronchopulmonary dysplasia. (1990) (64)
- Serum vitamin A levels in respiratory syncytial virus infection. (1994) (61)
- Genome-scale phylogenetic function annotation of large and diverse protein families. (2011) (59)
- Rate constants for CH(X 2Π) reactions at low total pressures (1989) (58)
- Stability selection for regression-based models of transcription factor–DNA binding specificity (2013) (57)
- Decision making in a robotic architecture for autonomy (2001) (56)
- Context Specific and Differential Gene Co-expression Networks via Bayesian Biclustering (2016) (54)
- Population-scale tissue transcriptomics maps long non-coding RNAs to complex disease (2021) (54)
- Onboard autonomy on the Three Corner Sat mission (2001) (50)
- CORRELATION OF ABDOMINAL rSO2 WITH SUPERIOR MESENTERIC ARTERY VELOCITIES IN PRETERM INFANTS (2013) (49)
- netNMF-sc: leveraging gene–gene interactions for imputation and dimensionality reduction in single-cell expression analysis (2019) (47)
- Lifetime measurements of GeH and CH in the A 2Δ, ν′=0 state by laser-induced fluorescence (1989) (45)
- Detecting differential growth of microbial populations with Gaussian process regression (2016) (44)
- Hypothesis: selective phosphodiesterase-5 inhibition improves outcome in preeclampsia. (2004) (42)
- Using Generic Preferences to Incrementally Improve Plan Quality (2000) (40)
- Effect of spironolactone-hydrochlorothiazide on lung function in infants with chronic bronchopulmonary dysplasia. (1989) (38)
- A latent factor model with a mixture of sparse and dense factors to model gene expression data with confounding effects (2013) (36)
- The Techsat-21 autonomous sciencecraft constellation (2001) (36)
- Joint analysis of expression levels and histological images identifies genes associated with tissue morphology (2018) (35)
- Sparse Multi-Output Gaussian Processes for Medical Time Series Prediction (2017) (33)
- PG-TS: Improved Thompson Sampling for Logistic Contextual Bandits (2018) (31)
- Control of Water Balance in Infants with Bronchopulmonary Dysplasia: Role of Endogenous Vasopressin (1988) (31)
- Hierarchical Compound Poisson Factorization (2016) (31)
- Optimal marker gene selection for cell type discrimination in single cell analyses (2019) (30)
- The RADARSAT-MAMM Automated Mission Planner (2001) (28)
- A planning approach to monitor and control for deep space communications (2000) (26)
- A graphical model for predicting protein molecular function (2006) (25)
- Cerebral regional oxygen saturation trends in infants with hypoxic-ischemic encephalopathy. (2017) (25)
- Temperature dependence of the CH+N2 reaction at low total pressure (1992) (23)
- An Optimal Policy for Patient Laboratory Tests in Intensive Care Units (2018) (22)
- Neurodevelopmental Outcomes of Neonates Randomized to Morphine or Methadone for Treatment of Neonatal Abstinence Syndrome. (2020) (22)
- Temperature dependence of the reactions of CH radicals with NO, NH3 and N2O in the range 200–1300 K (1993) (22)
- Erratum: Genetic effects on gene expression across human tissues (2017) (22)
- Posterior predictive checks to quantify lack-of-fit in admixture models of latent population structure (2014) (21)
- Exploring the phenotypic consequences of tissue specific gene expression variation inferred from GWAS summary statistics (2018) (21)
- Sparse multi-output Gaussian processes for online medical time series prediction (2020) (21)
- The Role of Granulocytes in the Pulmonary Response to Group B Streptococcal Toxin in Young Lambs (1987) (20)
- Statistical tests for detecting variance effects in quantitative trait studies (2018) (20)
- Genetic variation associated with euphorigenic effects of d-amphetamine is associated with diminished risk for schizophrenia and attention deficit hyperactivity disorder (2014) (20)
- Bayesian Structured Sparsity from Gaussian Fields (2014) (18)
- Balancing deliberation and reaction, planning and execution for space robotic applications (2001) (18)
- Pulmonary response to group B streptococcal toxin in young lambs. (1987) (18)
- A robust nonlinear low-dimensional manifold for single cell RNA-seq data (2018) (17)
- ACE inhibition and cardiometabolic risk factors, lung ACE2 and TMPRSS2 gene expression, and plasma ACE2 levels: a Mendelian randomization study (2020) (16)
- End-to-end Training of Deep Probabilistic CCA on Paired Biomedical Observations (2019) (15)
- Adaptive Randomized Dimension Reduction on Massive Data (2015) (15)
- Many long intergenic non-coding RNAs distally regulate mRNA gene expression levels (2016) (13)
- Expandable factor analysis (2014) (13)
- Causal Network Inference from Gene Transcriptional Time Series Response to Glucocorticoids (2019) (13)
- The Techsat-21 Autonomous Sciencecraft Constellation Demonstration (2001) (13)
- Phylogenetic molecular function annotation. (2009) (12)
- Dynamic Collaborative Filtering With Compound Poisson Factorization (2016) (12)
- Nonnegative spatial factorization (2021) (11)
- Distant regulatory effects of genetic variation in multiple human tissues (2016) (11)
- An integrated planning and scheduling prototype for automated Mars Rover Command Generation (2001) (11)
- Onboard autonomy software on the Three Corner Sat mission (2002) (11)
- A Bayesian test to identify variance effects (2015) (10)
- Fast Moment Estimation for Generalized Latent Dirichlet Models (2016) (8)
- Probabilistic Contrastive Principal Component Analysis (2020) (8)
- Active multi-fidelity Bayesian online changepoint detection (2021) (8)
- Bayesian nonparametric discovery of isoforms and individual specific quantification (2017) (8)
- A self-exciting point process to study multicellular spatial signaling patterns (2020) (8)
- A Scoping Review of Acupuncture as a Potential Intervention for Neonatal Abstinence Syndrome. (2019) (8)
- An Infant with Kasabach-Merritt Syndrome with Associated Renal Hematoma and Intussusception (2005) (7)
- Contrastive latent variable modeling with application to case-control sequencing experiments (2021) (7)
- Differential gene co-expression networks via Bayesian biclustering models (2014) (7)
- Molecular function prediction for a family exhibiting evolutionary tendencies toward substrate specificity swapping: Recurrence of tyrosine aminotransferase activity in the Iα subfamily (2013) (7)
- Coupled Compound Poisson Factorization (2017) (7)
- Bayesian group latent factor analysis with structured sparse priors (2014) (7)
- Unsupervised Domain Adaptation Using Approximate Label Matching (2016) (6)
- An architecture for an autonomous ground station controller (2001) (6)
- Optimal marker gene selection for cell type discrimination in single cell analyses (2021) (6)
- COP-E-CAT: cleaning and organization pipeline for EHR computational and analytic tasks (2021) (6)
- Nonparametric Bayesian multiarmed bandits for single-cell experiment design (2019) (6)
- GT-TS: Experimental design for maximizing cell type discovery in single-cell data (2018) (6)
- Mangravite et al. reply (2014) (5)
- Patient-Specific Effects of Medication Using Latent Force Models with Gaussian Processes (2019) (5)
- Automated Planning for Spacecraft and Mission Design (2000) (5)
- Latent variable modeling with random features (2020) (5)
- A Demonstration of Robust Planning and Scheduling in the Techsat-21 Autonomous Sciencecraft Constellation (2014) (5)
- A Bayesian nonparametric semi-supervised model for integration of multiple single-cell experiments (2020) (5)
- Defining admissible rewards for high-confidence policy evaluation in batch reinforcement learning (2019) (4)
- An Automated Rover Command Generation Prototype for the Mars 2001 Marie Curie Rover (2000) (4)
- A Divide and Conquer Strategy for High Dimensional Bayesian Factor Models (2016) (4)
- Hypothesis Generation Strategies for Adaptive Problem Solving (2000) (4)
- Empirical Evaluation of Local Search Methods for Adapting Planning Policies in a Stochastic Environment (2000) (4)
- Bayesian group latent factor analysis with structured sparsity (2014) (4)
- The DATA-CHASER and Citizen Explorer Benchmark Problem Sets (2001) (4)
- Diving deeper to predict noncoding sequence function (2015) (4)
- Predicting Sick Patient Volume in a Pediatric Outpatient Setting using Time Series Analysis (2019) (4)
- Alignment of spatial genomics and histology data using deep Gaussian processes (2022) (4)
- Large Linear Multi-output Gaussian Process Learning for Time Series (2017) (3)
- Differentially methylated regions and methylation QTLs for teen depression and early puberty in the Fragile Families Child Wellbeing Study (2021) (3)
- Brain kernel: A new spatial covariance function for fMRI data (2021) (3)
- Variance Minimization in the Wasserstein Space for Invariant Causal Prediction (2021) (3)
- Telescoping bimodal latent Dirichlet allocation to identify expression QTLs across tissues (2021) (3)
- Nonnegative spatial factorization applied to spatial genomics (2022) (2)
- Reducing costs of the modified Antarctic Mapping mission through automated planning (2001) (2)
- Large Linear Multi-output Gaussian Process Learning (2017) (2)
- Hierarchical Gaussian Processes and Mixtures of Experts to Model COVID-19 Patient Trajectories (2021) (2)
- Automated Planning for the Antarctic Mapping Mission (2000) (2)
- Protein Molecular Function Prediction (2005) (2)
- Predicting protein molecular function (2007) (2)
- Nonparametric Reduced-Rank Regression for Multi-SNP, Multi-Trait Association Mapping (2015) (2)
- Predicting genome-wide DNA methylation using methylation marks, genomic position, and DNA regulatory elements (2015) (2)
- A Poisson reduced-rank regression model for association mapping in sequencing data (2022) (2)
- Use of Near-Infrared Spectroscopy in the Management of Patients in Neonatal Intensive Care Units - An Example of Implementation of a New Technology (2012) (2)
- Stochastic optimization for adapting behaviors of exploration agents (2001) (2)
- Sequential Gaussian Processes for Online Learning of Nonstationary Functions (2019) (2)
- An Empirical Analysis of Local Search on Stochastic Optimization for Planner Strategy Selection (2000) (2)
- Thomas Irmer and Barbara Engelhardt (2000) (1)
- Stochastic optimization using genetics-inspired search techniques (2000) (1)
- 172 AN INTERDISCIPLINARY QUALITY IMPROVEMENT APPROACH TO PAIN MANAGEMENT IN THE NEONATAL INTENSIVE CARE UNIT (2005) (1)
- Expression QTLs in single-cell sequencing data (2022) (1)
- netNMF-sc: A Network Regularization Algorithm for Dimensionality Reduction and Imputation of Single-Cell Expression Data (2019) (1)
- AdaCluster : Adaptive Clustering for Heterogeneous Data (2015) (1)
- El Congreso durante los primeros años de la presidencia de Perón (1946-1949) (2012) (1)
- A demonstration of robust planning, scheduling, and execution for the Techsat-21 autonomous sciencecraft constellation (2001) (1)
- Clustering with Beta Divergences (2015) (1)
- Edinburgh Research Explorer Meta-analysis of genome-wide association studies for extraversion (2018) (1)
- Guiding Efficient, Effective, and Patient-Oriented Electrolyte Replacement in Critical Care: An Artificial Intelligence Reinforcement Learning Approach (2022) (1)
- Multi-group Gaussian Processes (2021) (1)
- Bayesian Ordinal Quantile Regression with a Partially Collapsed Gibbs Sampler (2019) (1)
- Automated planning for the Modified Antarctic Mapping Mission (2001) (1)
- Adapting Control Methods for Autonomous Exploration of Unknown Environments (2000) (1)
- 1755 WHAT IS THE OBJECTIVE OF FUROSEMIDE THERAPY IN INFANTS WITH CHRONIC LUNG DISEASE? (1985) (1)
- Hypothesis generation strategies for adaptive problem solving [spacecraft mission control] (2000) (1)
- Towards ‘end-to-end’ analysis and understanding of biological timecourse data (2022) (1)
- Parts-based decomposition of spatial genomics data finds distinct tissue regions (2023) (0)
- Le theatre en Europe (2006) (0)
- Meta-analysis of Genome-Wide Association Studies for Extraversion: Findings from the Genetics of Personality Consortium (2015) (0)
- Anastomosis of the umbilical arteries: physiologic variant or complication of umbilical catheterization? (1997) (0)
- Bayesian nonparametric discovery of isoforms and individual specific quantification (2018) (0)
- Robust planning with imperfect models (2001) (0)
- diverse protein families Genome-scale phylogenetic function annotation of large and Material Supplemental (2011) (0)
- Monitor and Control of Deep Space Communications Through AI Planning (2000) (0)
- Kernel Density Bayesian Inverse Reinforcement Learning (2023) (0)
- Becoming a Director: Lessons Learned. (2006) (0)
- Bayesian Latent Factor Models Recover Gene Networks and Expression QTLs (2014) (0)
- Nonparametric Deconvolution Models (2020) (0)
- Mixed-initiative planning for automating mission design and operation (2001) (0)
- Videophones in the diagnosis of acute upper airway obstruction in children (2017) (0)
- K ERNEL D ENSITY B AYESIAN I NVERSE R EINFORCEMENT L EARNING (2022) (0)
- Generation Scotland (2016). Meta-analysis of Genome-Wide Association Studies for Extraversion: Findings from the Genetics of Personality Consortium. (2), (2015) (0)
- Wortmeldungen : Gespräche mit André Coutin (2000) (0)
- HYPERGROUPS ON THE SET OF ALL INTEGERS (2002) (0)
- Optimizing the design of spatial genomic studies (2023) (0)
- AB0035 A physiological network of igg autoantibodies targeting g protein coupled receptors (2018) (0)
- Inferring Causality from GWAS Data (2015) (0)
- SEX DIFFERENCES AT THE MOLECULAR LEVEL: LESSONS FROM THE HUMAN TRANSCRIPTOME (2019) (0)
- Software for Automation of Real-Time Agents, Version 2 (2005) (0)
- Using a Portfolio of Algorithms for Planning and Scheduling (2003) (0)
- 1825 THE ROLE OF GRANULOCYTES IN THE LUNG FUNCTION RESPONSE TO GROUP B STREPTOCOCCAL TOXIN IN YOUNG LAMBS (1985) (0)
- GPCR-specific autoantibody signatures are associated with physiological and pathological immune homeostasis (2018) (0)
- Nested Policy Reinforcement Learning (2021) (0)
- Berlin Old and New: Images of a City (2000) (0)
- Early NIRS predicts MRI injury in Infants with HIE undergoing hypothermia (2014) (0)
- The Dardanelles Expedition uncensored (0)
- Automatically Utilizing Science Opportunities with Continuous Plan Improvements (2000) (0)
- A Prototype for Ground-based Automated Rover Command Generation (2000) (0)
- 2 Onboard Science Algorithms 2 . 1 Science Experiments The (2001) (0)
- A Tool for Autonomous Ground-Based Rover Planning (2001) (0)
- Problem solving (and teaching) toward objectives. (1987) (0)
- Improving Substance Abuse Treatment Referrals in Rural Appalachia (2012) (0)
- Bodendenkmalpflege im ländlichen Raum am Beispiel Niederbayerns : Gegebenheiten, Möglichkeiten, Ziele (1997) (0)
- Molecular Function Prediction for a Family Exhibiting Evolutionary Tendencies Towards Substrate Specificity Swapping : Recurrence of Tyrosine Aminotransferase Activity in the I α Subfamily Short Title : Aminotransferase Substrate Specificity Swapping Keywords : Enzyme , Kinetics , Phylogenetics , Py (2013) (0)
- Linking histology and molecular state across human tissues (2022) (0)
- [4] N. Friedman, M. Linial, I. Nachman, and D. Pe’er. Using Bayesian networks (2009) (0)
- TENNESSEE BOARD OF MEDICAL EXAMINERS (2004) (0)
- Open lung biopsy (OLB) to diagnose pulmonary complications (PC) after high dose chemotherapy (HDC) and allogeneic stem cell transplant (ASCT). (2004) (0)
- La alcancia de la familia (1998) (0)
- Fisher Kernels and Semidefinite Programming (0)
- A robust nonlinear low-dimensional manifold for single cell RNA-seq data (2020) (0)
- Divide-and-conquer for covariance matrix estimation (2016) (0)
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