Rob Knight
#27,748
Most Influential Person Now
New Zealand computational microbiologist
Rob Knight 's AcademicInfluence.com Rankings
Rob Knight biology Degrees
Biology
#736
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#1280
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Bioinformatics
#3
World Rank
#3
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Computational Biology
#5
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#5
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Microbiology
#13
World Rank
#23
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Biology
Rob Knight 's Degrees
- PhD Biochemistry University of New Zealand
- Bachelors Genetics University of New Zealand
Why Is Rob Knight Influential?
(Suggest an Edit or Addition)According to Wikipedia, Rob Knight is a computational microbiologist and professor at the University of California, San Diego. His research involves the development of laboratory and computational techniques to characterize the microbiomes of humans, animals, and the environment.
Rob Knight 's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- QIIME allows analysis of high-throughput community sequencing data (2010) (28011)
- UCHIME improves sensitivity and speed of chimera detection (2011) (11587)
- Structure, Function and Diversity of the Healthy Human Microbiome (2012) (8630)
- Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 (2019) (7340)
- A core gut microbiome in obese and lean twins (2008) (6962)
- Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences (2013) (6561)
- Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms (2012) (6463)
- UniFrac: a New Phylogenetic Method for Comparing Microbial Communities (2005) (6441)
- Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample (2010) (6362)
- Human gut microbiome viewed across age and geography (2012) (5947)
- Obesity alters gut microbial ecology. (2005) (5355)
- Linking Long-Term Dietary Patterns with Gut Microbial Enterotypes (2011) (5100)
- The Human Microbiome Project (2007) (4601)
- An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea (2011) (4095)
- Diversity, stability and resilience of the human gut microbiota (2012) (3779)
- PyNAST: a flexible tool for aligning sequences to a template alignment (2009) (3272)
- Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns (2010) (3244)
- Evolution of Mammals and Their Gut Microbes (2008) (3056)
- Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale (2009) (2998)
- Gut Microbiota from Twins Discordant for Obesity Modulate Metabolism in Mice (2013) (2874)
- Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons. (2011) (2867)
- Soil bacterial and fungal communities across a pH gradient in an arable soil (2010) (2830)
- Bacterial Community Variation in Human Body Habitats Across Space and Time (2009) (2803)
- Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing (2012) (2779)
- The Impact of the Gut Microbiota on Human Health: An Integrative View (2012) (2776)
- The Effect of Diet on the Human Gut Microbiome: A Metagenomic Analysis in Humanized Gnotobiotic Mice (2009) (2691)
- The treatment-naive microbiome in new-onset Crohn's disease. (2014) (2269)
- Human Genetics Shape the Gut Microbiome (2014) (2191)
- A framework for human microbiome research (2012) (2113)
- Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking (2016) (2091)
- Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin (2018) (2066)
- Gut Microbiota Regulate Motor Deficits and Neuroinflammation in a Model of Parkinson’s Disease (2016) (2050)
- UniFrac: an effective distance metric for microbial community comparison (2011) (1939)
- Succession of microbial consortia in the developing infant gut microbiome (2010) (1881)
- Quantitative and Qualitative β Diversity Measures Lead to Different Insights into Factors That Structure Microbial Communities (2007) (1817)
- The Long-Term Stability of the Human Gut Microbiota (2013) (1559)
- Diet Drives Convergence in Gut Microbiome Functions Across Mammalian Phylogeny and Within Humans (2011) (1538)
- A communal catalogue reveals Earth’s multiscale microbial diversity (2017) (1501)
- Host Remodeling of the Gut Microbiome and Metabolic Changes during Pregnancy (2012) (1442)
- UniFrac – An online tool for comparing microbial community diversity in a phylogenetic context (2006) (1420)
- Global patterns in bacterial diversity (2007) (1416)
- Worlds within worlds: evolution of the vertebrate gut microbiota (2008) (1396)
- High-fat diet determines the composition of the murine gut microbiome independently of obesity. (2009) (1340)
- Metabolic Syndrome and Altered Gut Microbiota in Mice Lacking Toll-Like Receptor 5 (2010) (1297)
- Analysis of composition of microbiomes: a novel method for studying microbial composition (2015) (1254)
- Comparative metagenomic, phylogenetic and physiological analyses of soil microbial communities across nitrogen gradients (2011) (1226)
- Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex (2008) (1225)
- Current understanding of the human microbiome (2018) (1199)
- Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases (2019) (1186)
- Normalization and microbial differential abundance strategies depend upon data characteristics (2017) (1133)
- Improved Bacterial 16S rRNA Gene (V4 and V4-5) and Fungal Internal Transcribed Spacer Marker Gene Primers for Microbial Community Surveys (2015) (1061)
- Examining the global distribution of dominant archaeal populations in soil (2011) (1050)
- The influence of sex, handedness, and washing on the diversity of hand surface bacteria (2008) (1036)
- Fast UniFrac: Facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data (2009) (1035)
- Bayesian community-wide culture-independent microbial source tracking (2011) (1020)
- Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns (2017) (1020)
- Moving pictures of the human microbiome (2011) (1001)
- Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea (2017) (990)
- Gut Microbiomes of Malawian Twin Pairs Discordant for Kwashiorkor (2013) (967)
- EMPeror: a tool for visualizing high-throughput microbial community data (2013) (955)
- A comprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses (2009) (944)
- QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science (2018) (906)
- Species-level functional profiling of metagenomes and metatranscriptomes (2018) (900)
- Best practices for analysing microbiomes (2018) (899)
- Human oral, gut, and plaque microbiota in patients with atherosclerosis (2010) (887)
- Microbial community profiling for human microbiome projects: Tools, techniques, and challenges. (2009) (864)
- Defining seasonal marine microbial community dynamics (2011) (857)
- Cohabiting family members share microbiota with one another and with their dogs (2013) (806)
- Strains, functions and dynamics in the expanded Human Microbiome Project (2017) (795)
- Using QIIME to Analyze 16S rRNA Gene Sequences from Microbial Communities (2011) (784)
- Bacterial phylogeny structures soil resistomes across habitats (2014) (779)
- Defining the human microbiome. (2012) (729)
- Genetic Determinants of the Gut Microbiome in UK Twins. (2016) (714)
- Dynamics of the human gut microbiome in Inflammatory Bowel Disease (2017) (699)
- The Earth Microbiome project: successes and aspirations (2014) (695)
- Longitudinal analysis of microbial interaction between humans and the indoor environment (2014) (695)
- Partial restoration of the microbiota of cesarean-born infants via vaginal microbial transfer (2016) (690)
- Short pyrosequencing reads suffice for accurate microbial community analysis (2007) (675)
- The gut–liver axis and the intersection with the microbiome (2018) (671)
- Meta‐analyses of human gut microbes associated with obesity and IBD (2014) (655)
- Gut Microbes and the Brain: Paradigm Shift in Neuroscience (2014) (646)
- The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome (2012) (639)
- The microbiome of uncontacted Amerindians (2015) (638)
- Environmental and ecological factors that shape the gut bacterial communities of fish: a meta‐analysis (2012) (637)
- Forensic identification using skin bacterial communities (2010) (628)
- Experimental and analytical tools for studying the human microbiome (2011) (627)
- Microbiota regulate intestinal absorption and metabolism of fatty acids in the zebrafish. (2012) (601)
- Gut bacteria from multiple sclerosis patients modulate human T cells and exacerbate symptoms in mouse models (2017) (593)
- Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications (2011) (588)
- Identifying genetic determinants needed to establish a human gut symbiont in its habitat. (2009) (586)
- The under-recognized dominance of Verrucomicrobia in soil bacterial communities. (2011) (568)
- Evolution of Symbiotic Bacteria in the Distal Human Intestine (2007) (562)
- Enterotypes in the landscape of gut microbial community composition (2017) (561)
- Bacterial community structures are unique and resilient in full-scale bioenergy systems (2011) (553)
- Conducting a Microbiome Study (2014) (553)
- Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers (2008) (551)
- Soil bacterial diversity in the Arctic is not fundamentally different from that found in other biomes. (2010) (549)
- Seasonal cycling in the gut microbiome of the Hadza hunter-gatherers of Tanzania (2017) (548)
- Human Gut Microbiota from Autism Spectrum Disorder Promote Behavioral Symptoms in Mice (2019) (545)
- Microbiome-wide association studies link dynamic microbial consortia to disease (2016) (533)
- The ecology of the phyllosphere: geographic and phylogenetic variability in the distribution of bacteria on tree leaves. (2010) (533)
- Parkinson's disease and Parkinson's disease medications have distinct signatures of the gut microbiome (2017) (520)
- The Impact of a Consortium of Fermented Milk Strains on the Gut Microbiome of Gnotobiotic Mice and Monozygotic Twins (2011) (512)
- Metagenomic and Small-Subunit rRNA Analyses Reveal the Genetic Diversity of Bacteria, Archaea, Fungi, and Viruses in Soil (2007) (512)
- Impact of training sets on classification of high-throughput bacterial 16s rRNA gene surveys (2011) (497)
- American Gut: an Open Platform for Citizen Science Microbiome Research (2018) (496)
- Regional variation limits applications of healthy gut microbiome reference ranges and disease models (2018) (493)
- Microbiota restoration: natural and supplemented recovery of human microbial communities (2011) (492)
- Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences (2014) (487)
- Advancing our understanding of the human microbiome using QIIME. (2013) (486)
- Organismal, genetic, and transcriptional variation in the deeply sequenced gut microbiomes of identical twins (2010) (480)
- Microbiota and Host Nutrition across Plant and Animal Kingdoms. (2015) (474)
- Correlation detection strategies in microbial data sets vary widely in sensitivity and precision (2016) (471)
- Conditionally Rare Taxa Disproportionately Contribute to Temporal Changes in Microbial Diversity (2014) (467)
- Contamination in Low Microbial Biomass Microbiome Studies: Issues and Recommendations. (2019) (465)
- Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions (2010) (458)
- Genetic control of obesity and gut microbiota composition in response to high-fat, high-sucrose diet in mice. (2013) (458)
- Consistent effects of nitrogen fertilization on soil bacterial communities in contrasting systems. (2010) (452)
- Species divergence and the measurement of microbial diversity. (2008) (449)
- A Guide to Enterotypes across the Human Body: Meta-Analysis of Microbial Community Structures in Human Microbiome Datasets (2013) (445)
- Microbiome analyses of blood and tissues suggest cancer diagnostic approach (2020) (442)
- Geographic distance and pH drive bacterial distribution in alkaline lake sediments across Tibetan Plateau (2012) (437)
- Diversity, structure and convergent evolution of the global sponge microbiome (2016) (434)
- Individual diet has sex-dependent effects on vertebrate gut microbiota (2014) (433)
- GABA Modulating Bacteria of the Human Gut Microbiota (2018) (419)
- The Macaque Gut Microbiome in Health, Lentiviral Infection, and Chronic Enterocolitis (2008) (414)
- Transient inability to manage proteobacteria promotes chronic gut inflammation in TLR5-deficient mice. (2012) (408)
- Shifts in bacterial community structure associated with inputs of low molecular weight carbon compounds to soil (2010) (408)
- Rewiring the keyboard: evolvability of the genetic code (2001) (407)
- Specialized metabolites from the microbiome in health and disease. (2014) (406)
- Reconstructing the Microbial Diversity and Function of Pre-Agricultural Tallgrass Prairie Soils in the United States (2013) (406)
- Sequencing our way towards understanding global eukaryotic biodiversity. (2012) (405)
- A simple model based on mutation and selection explains trends in codon and amino-acid usage and GC composition within and across genomes (2001) (393)
- Global patterns in the biogeography of bacterial taxa. (2011) (386)
- Subsistence strategies in traditional societies distinguish gut microbiomes (2015) (385)
- The Human Microbiome Project: A Community Resource for the Healthy Human Microbiome (2012) (378)
- Supervised classification of human microbiota. (2011) (376)
- Gut microbiota utilize immunoglobulin A for mucosal colonization (2018) (374)
- Sampling and pyrosequencing methods for characterizing bacterial communities in the human gut using 16S sequence tags (2010) (370)
- Responses of Gut Microbiota to Diet Composition and Weight Loss in Lean and Obese Mice (2012) (367)
- Meta-analyses of studies of the human microbiota (2013) (364)
- Alterations in the gut microbiota associated with HIV-1 infection. (2013) (363)
- Global biogeography of highly diverse protistan communities in soil (2012) (362)
- The human microbiome project: exploring the microbial part of ourselves in a changing world (361)
- Microbial endocrinology: the interplay between the microbiota and the endocrine system. (2015) (357)
- Qiita: rapid, web-enabled microbiome meta-analysis (2018) (354)
- Complex interactions among diet, gastrointestinal transit, and gut microbiota in humanized mice. (2013) (354)
- Development of the human gastrointestinal microbiota and insights from high-throughput sequencing. (2011) (350)
- Rapid denoising of pyrosequencing amplicon data: exploiting the rank-abundance distribution (2010) (348)
- PrimerProspector: de novo design and taxonomic analysis of barcoded polymerase chain reaction primers (2011) (347)
- Role of the microbiome in human development (2019) (347)
- The gut microbiota in human energy homeostasis and obesity (2015) (346)
- Spatial variability in airborne bacterial communities across land-use types and their relationship to the bacterial communities of potential source environments (2011) (345)
- Effect of storage conditions on the assessment of bacterial community structure in soil and human-associated samples. (2010) (344)
- Using QIIME to Analyze 16S rRNA Gene Sequences from Microbial Communities (2012) (343)
- Microbial community assembly and metabolic function during mammalian corpse decomposition (2016) (336)
- Establishing microbial composition measurement standards with reference frames (2019) (336)
- Inflammation-induced IgA+ cells dismantle anti-liver cancer immunity (2017) (327)
- Temporal variability is a personalized feature of the human microbiome (2014) (326)
- Microbes do not follow the elevational diversity patterns of plants and animals. (2011) (322)
- Large-scale replicated field study of maize rhizosphere identifies heritable microbes (2018) (321)
- Preservation Methods Differ in Fecal Microbiome Stability, Affecting Suitability for Field Studies (2016) (317)
- Fast-Find: A novel computational approach to analyzing combinatorial motifs (2006) (315)
- Metagenomics reveals sediment microbial community response to Deepwater Horizon oil spill (2014) (314)
- Dietary effects on human gut microbiome diversity (2014) (313)
- Selection of primers for optimal taxonomic classification of environmental 16S rRNA gene sequences (2012) (311)
- Changes through time: integrating microorganisms into the study of succession. (2010) (310)
- Assessment of variation in microbial community amplicon sequencing by the Microbiome Quality Control (MBQC) project consortium (2017) (309)
- Simultaneous Amplicon Sequencing to Explore Co-Occurrence Patterns of Bacterial, Archaeal and Eukaryotic Microorganisms in Rumen Microbial Communities (2013) (302)
- Reshaping the gut microbiome with bacterial transplantation and antibiotic intake. (2010) (299)
- A meta-analysis of changes in bacterial and archaeal communities with time (2013) (299)
- Molecular cartography of the human skin surface in 3D (2015) (294)
- The amphibian skin‐associated microbiome across species, space and life history stages (2014) (284)
- Bacterial Communities Associated with the Lichen Symbiosis (2010) (283)
- Bacteria from Diverse Habitats Colonize and Compete in the Mouse Gut (2014) (282)
- Phylogenetic Placement of Exact Amplicon Sequences Improves Associations with Clinical Information (2018) (280)
- Characterization of Airborne Microbial Communities at a High-Elevation Site and Their Potential To Act as Atmospheric Ice Nuclei (2009) (278)
- The microbiome and human cancer (2021) (273)
- Rethinking "enterotypes". (2014) (271)
- The interpersonal and intrapersonal diversity of human-associated microbiota in key body sites. (2012) (264)
- Antibiotic-induced microbiome depletion alters metabolic homeostasis by affecting gut signaling and colonic metabolism (2018) (263)
- A microbial clock provides an accurate estimate of the postmortem interval in a mouse model system (2013) (263)
- Unlocking the potential of metagenomics through replicated experimental design (2012) (259)
- Short-Term Temporal Variability in Airborne Bacterial and Fungal Populations (2007) (257)
- Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 (2019) (256)
- Microbial Biogeography of Public Restroom Surfaces (2011) (256)
- Microbial community resemblance methods differ in their ability to detect biologically relevant patterns (2010) (255)
- Meeting Report: The Terabase Metagenomics Workshop and the Vision of an Earth Microbiome Project (2010) (253)
- Genetic and environmental control of host-gut microbiota interactions (2015) (250)
- The 'rare biosphere': a reality check (2009) (248)
- Co-habiting amphibian species harbor unique skin bacterial communities in wild populations (2011) (245)
- Early fixation of an optimal genetic code. (2000) (245)
- Extreme Dysbiosis of the Microbiome in Critical Illness (2016) (244)
- Microbial community dynamics and effect of environmental microbial reservoirs on red-backed salamanders (Plethodon cinereus) (2013) (243)
- Finding the missing links among metabolites, microbes, and the host. (2014) (241)
- Regulation of myocardial ketone body metabolism by the gut microbiota during nutrient deprivation (2009) (238)
- The Microbiome and Human Biology. (2017) (238)
- Sources of Bacteria in Outdoor Air across Cities in the Midwestern United States (2011) (237)
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0 (2020) (235)
- Evaluating the Information Content of Shallow Shotgun Metagenomics (2018) (234)
- BugBase predicts organism-level microbiome phenotypes (2017) (231)
- The Effects of Captivity on the Mammalian Gut Microbiome (2017) (229)
- Convergence of gut microbiomes in myrmecophagous mammals (2014) (229)
- Selection, history and chemistry: the three faces of the genetic code. (1999) (228)
- Dietary input of microbes and host genetic variation shape among-population differences in stickleback gut microbiota (2015) (227)
- The intestinal metabolome: an intersection between microbiota and host. (2014) (226)
- Genetically dictated change in host mucus carbohydrate landscape exerts a diet-dependent effect on the gut microbiota (2013) (225)
- Dynamic changes in short- and long-term bacterial composition following fecal microbiota transplantation for recurrent Clostridium difficile infection (2015) (225)
- Postprandial remodeling of the gut microbiota in Burmese pythons (2010) (225)
- HLA-B27 and Human β2-Microglobulin Affect the Gut Microbiota of Transgenic Rats (2014) (225)
- Host variables confound gut microbiota studies of human disease (2020) (221)
- Individuals' diet diversity influences gut microbial diversity in two freshwater fish (threespine stickleback and Eurasian perch) (2014) (221)
- FXR Regulates Intestinal Cancer Stem Cell Proliferation (2019) (218)
- Balance Trees Reveal Microbial Niche Differentiation (2017) (217)
- Bacterial colonization and succession in a newly opened hospital (2017) (217)
- Pan-genome of the dominant human gut-associated archaeon, Methanobrevibacter smithii, studied in twins (2011) (217)
- Global chemical effects of the microbiome include new bile-acid conjugations (2020) (215)
- ConStrains identifies microbial strains in metagenomic datasets (2015) (214)
- Composition of Human Skin Microbiota Affects Attractiveness to Malaria Mosquitoes (2011) (212)
- A Novel Sparse Compositional Technique Reveals Microbial Perturbations (2019) (210)
- Large-scale association analyses identify host factors influencing human gut microbiome composition (2020) (206)
- Analysis of the Gut Microbiota in the Old Order Amish and Its Relation to the Metabolic Syndrome (2012) (204)
- Emergence and rapid transmission of SARS-CoV-2 B.1.1.7 in the United States (2021) (202)
- PyCogent: a toolkit for making sense from sequence (2007) (199)
- Evidence for a persistent microbial seed bank throughout the global ocean (2013) (199)
- Phylogenetic stratigraphy in the Guerrero Negro hypersaline microbial mat (2012) (197)
- The Genomic Standards Consortium (2011) (196)
- Genomic Encyclopedia of Bacteria and Archaea: Sequencing a Myriad of Type Strains (2014) (195)
- Lake microbial communities are resilient after a whole-ecosystem disturbance (2012) (194)
- Baseline survey of the anatomical microbial ecology of an important food plant: Solanum lycopersicum (tomato) (2013) (192)
- Microbial Eukaryotes in the Human Microbiome: Ecology, Evolution, and Future Directions (2011) (191)
- The human microbiome in evolution (2017) (190)
- Evolutionary trends in host physiology outweigh dietary niche in structuring primate gut microbiomes (2018) (187)
- A gut microbiome signature for cirrhosis due to nonalcoholic fatty liver disease (2019) (186)
- The Western English Channel contains a persistent microbial seed bank (2011) (185)
- A unified initiative to harness Earth's microbiomes (2015) (183)
- The microbiome quality control project: baseline study design and future directions (2015) (180)
- Insights from Characterizing Extinct Human Gut Microbiomes (2012) (180)
- Diversity, distribution and sources of bacteria in residential kitchens. (2013) (180)
- Heritable components of the human fecal microbiome are associated with visceral fat (2016) (179)
- Impact of Dietary Resistant Starch on the Human Gut Microbiome, Metaproteome, and Metabolome (2017) (179)
- The Earth Microbiome Project: Meeting report of the “1st EMP meeting on sample selection and acquisition” at Argonne National Laboratory October 6th 2010. (2010) (178)
- A gut bacterial amyloid promotes α-synuclein aggregation and motor impairment in mice (2020) (175)
- Improved HF183 Quantitative Real-Time PCR Assay for Characterization of Human Fecal Pollution in Ambient Surface Water Samples (2014) (174)
- RNA–Amino Acid Binding: A Stereochemical Era for the Genetic Code (2009) (174)
- Nurture trumps nature in a longitudinal survey of salivary bacterial communities in twins from early adolescence to early adulthood (2012) (172)
- Farm-like indoor microbiota in non-farm homes protects children from asthma development (2019) (171)
- Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin (2018) (170)
- Improving saliva shotgun metagenomics by chemical host DNA depletion (2018) (169)
- The molecular basis of nuclear genetic code change in ciliates (2001) (168)
- The microbiome explored: recent insights and future challenges (2013) (166)
- Widespread colonization of the lung by Tropheryma whipplei in HIV infection. (2013) (165)
- Microbiome 101: Studying, Analyzing, and Interpreting Gut Microbiome Data for Clinicians (2019) (165)
- Immunization with a heat-killed preparation of the environmental bacterium Mycobacterium vaccae promotes stress resilience in mice (2016) (165)
- Structure-based protein function prediction using graph convolutional networks (2021) (165)
- Origins of the genetic code: the escaped triplet theory. (2005) (165)
- Gut Microbiota Offers Universal Biomarkers across Ethnicity in Inflammatory Bowel Disease Diagnosis and Infliximab Response Prediction (2018) (164)
- Direct sequencing of the human microbiome readily reveals community differences (2010) (163)
- Interacting Symbionts and Immunity in the Amphibian Skin Mucosome Predict Disease Risk and Probiotic Effectiveness (2014) (161)
- Tracking down the sources of experimental contamination in microbiome studies (2014) (159)
- The sponge microbiome project (2017) (158)
- Associations between human milk oligosaccharides and infant body composition in the first 6 mo of life. (2015) (157)
- Open-Source Sequence Clustering Methods Improve the State Of the Art (2016) (156)
- A Modular Organization of the Human Intestinal Mucosal Microbiota and Its Association with Inflammatory Bowel Disease (2013) (156)
- Seasonal restructuring of the ground squirrel gut microbiota over the annual hibernation cycle. (2013) (155)
- A large-scale benchmark study of existing algorithms for taxonomy-independent microbial community analysis (2012) (153)
- Exercise Is More Effective at Altering Gut Microbial Composition and Producing Stable Changes in Lean Mass in Juvenile versus Adult Male F344 Rats (2015) (150)
- Prediction of Early Childhood Caries via Spatial-Temporal Variations of Oral Microbiota. (2015) (149)
- Biogeography and habitat modelling of high-alpine bacteria. (2010) (149)
- The Microbiota, Immunoregulation, and Mental Health: Implications for Public Health (2016) (148)
- Comparative Analyses of Vertebrate Gut Microbiomes Reveal Convergence between Birds and Bats (2020) (146)
- Earth microbial co-occurrence network reveals interconnection pattern across microbiomes (2020) (146)
- Collecting Fecal Samples for Microbiome Analyses in Epidemiology Studies (2015) (145)
- Major Histocompatibility Complex class IIb polymorphism influences gut microbiota composition and diversity (2014) (142)
- Dog and human inflammatory bowel disease rely on overlapping yet distinct dysbiosis networks (2016) (141)
- Overview and systematic review of studies of microbiome in schizophrenia and bipolar disorder. (2018) (141)
- Communities of microbial eukaryotes in the mammalian gut within the context of environmental eukaryotic diversity (2014) (138)
- Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea (2019) (138)
- Antifungal isolates database of amphibian skin-associated bacteria and function against emerging fungal pathogens (2015) (138)
- Variation in the Microbiota of Ixodes Ticks with Regard to Geography, Species, and Sex (2015) (137)
- Structural basis for the killing of human beta cells by CD 8 + T cells in type 1 diabetes (2012) (134)
- Impact of fire on active layer and permafrost microbial communities and metagenomes in an upland Alaskan boreal forest (2014) (133)
- Human-associated microbial signatures: examining their predictive value. (2011) (133)
- A Universal Gut-Microbiome-Derived Signature Predicts Cirrhosis. (2020) (132)
- Global chemical analysis of biology by mass spectrometry (2017) (131)
- Toward a Predictive Understanding of Earth’s Microbiomes to Address 21st Century Challenges (2016) (131)
- Identifying genomic and metabolic features that can underlie early successional and opportunistic lifestyles of human gut symbionts (2012) (130)
- Differences in gut microbiome composition between persons with chronic schizophrenia and healthy comparison subjects (2019) (130)
- Cross-biome comparison of microbial association networks (2015) (130)
- Characterization of the total and viable bacterial and fungal communities associated with the International Space Station surfaces (2019) (129)
- Fructose stimulated de novo lipogenesis is promoted by inflammation (2020) (128)
- Bacterial Diversity in Two Neonatal Intensive Care Units (NICUs) (2013) (127)
- High-accuracy long-read amplicon sequences using unique molecular identifiers with Nanopore or PacBio sequencing (2021) (126)
- Translocation of Viable Gut Microbiota to Mesenteric Adipose Drives Formation of Creeping Fat in Humans (2020) (126)
- Role of the microbiome, probiotics, and ‘dysbiosis therapy’ in critical illness (2016) (124)
- Tools for the Microbiome: Nano and Beyond. (2015) (124)
- How biologists conceptualize genes: An empirical study (2004) (122)
- The convergence of carbohydrate active gene repertoires in human gut microbes (2008) (122)
- The mind-body-microbial continuum (2011) (121)
- DNA extraction for streamlined metagenomics of diverse environmental samples. (2017) (120)
- The Gut Microbiome, Aging, and Longevity: A Systematic Review (2020) (119)
- Biphasic assembly of the murine intestinal microbiota during early development (2013) (118)
- QIIME 2 Enables Comprehensive End‐to‐End Analysis of Diverse Microbiome Data and Comparative Studies with Publicly Available Data (2020) (116)
- Age and sex-dependent patterns of gut microbial diversity in human adults (2019) (116)
- Significant Impacts of Increasing Aridity on the Arid Soil Microbiome (2017) (114)
- Comparison of Illumina paired-end and single-direction sequencing for microbial 16S rRNA gene amplicon surveys (2011) (112)
- Host-bacterial coevolution and the search for new drug targets. (2008) (111)
- Probiotic treatment restores protection against lethal fungal infection lost during amphibian captivity (2016) (111)
- Tiny microbes, enormous impacts: what matters in gut microbiome studies? (2016) (110)
- Evolutionary rates vary among rRNA structural elements (2007) (109)
- Changes in microbial ecology after fecal microbiota transplantation for recurrent C. difficile infection affected by underlying inflammatory bowel disease (2017) (108)
- Effect of preservation method on spider monkey (Ateles geoffroyi) fecal microbiota over 8 weeks. (2015) (108)
- Distinct cutaneous bacterial assemblages in a sampling of South American Amerindians and US residents (2012) (108)
- Changes in vaginal microbiota following antimicrobial and probiotic therapy (2015) (107)
- Geography and Location Are the Primary Drivers of Office Microbiome Composition (2016) (106)
- The Microbiome in Posttraumatic Stress Disorder and Trauma-Exposed Controls: An Exploratory Study (2017) (106)
- Learning accurate representations of microbe-metabolite interactions (2019) (105)
- MIxS-BE: a MIxS extension defining a minimum information standard for sequence data from the built environment (2013) (105)
- Variable responses of human and non-human primate gut microbiomes to a Western diet (2015) (102)
- Anal gas evacuation and colonic microbiota in patients with flatulence: effect of diet (2013) (102)
- Stability of operational taxonomic units: an important but neglected property for analyzing microbial diversity (2015) (102)
- Quantifying and Understanding Well-to-Well Contamination in Microbiome Research (2019) (102)
- Spatial and temporal dynamics of the microbial community in the Hanford unconfined aquifer (2012) (102)
- Preserving microbial diversity (2018) (102)
- Mass spectrometry searches using MASST (2020) (101)
- Toward Effective Probiotics for Autism and Other Neurodevelopmental Disorders (2013) (101)
- Gut Microbiota in the First 2 Years of Life and the Association with Body Mass Index at Age 12 in a Norwegian Birth Cohort (2018) (101)
- How Mitochondria Redefine the Code (2001) (101)
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- KatharoSeq Enables High-Throughput Microbiome Analysis from Low-Biomass Samples (2018) (98)
- β-Cell–Specific CD8 T Cell Phenotype in Type 1 Diabetes Reflects Chronic Autoantigen Exposure (2014) (98)
- Genomic epidemiology identifies emergence and rapid transmission of SARS-CoV-2 B.1.1.7 in the United States (2021) (96)
- Circulating Preproinsulin Signal Peptide–Specific CD8 T Cells Restricted by the Susceptibility Molecule HLA-A24 Are Expanded at Onset of Type 1 Diabetes and Kill β-Cells (2012) (96)
- Natural selection is not required to explain universal compositional patterns in rRNA secondary structure categories. (2006) (95)
- Ribosomal RNA diversity predicts genome diversity in gut bacteria and their relatives (2010) (95)
- Parallel Evolution of the Genetic Code in Arthropod Mitochondrial Genomes (2006) (95)
- Comparison of Collection Methods for Fecal Samples in Microbiome Studies (2017) (95)
- Predictive modeling of gingivitis severity and susceptibility via oral microbiota (2014) (95)
- Are all horizontal gene transfers created equal? Prospects for mechanism-based studies of HGT patterns. (2008) (94)
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- Inhibitory bacteria reduce fungi on early life stages of endangered Colorado boreal toads (Anaxyrus boreas) (2015) (92)
- Host age, social group, and habitat type influence the gut microbiota of wild ring‐tailed lemurs (Lemur catta) (2016) (90)
- Diet Versus Phylogeny: a Comparison of Gut Microbiota in Captive Colobine Monkey Species (2018) (90)
- Phylogenetic and ecological factors impact the gut microbiota of two Neotropical primate species (2016) (90)
- Do Proteins Predate DNA? (1999) (90)
- Fat and vitamin intakes during pregnancy have stronger relations with a pro-inflammatory maternal microbiota than does carbohydrate intake (2016) (89)
- Three-Dimensional Microbiome and Metabolome Cartography of a Diseased Human Lung. (2017) (88)
- Sharing and community curation of mass spectrometry data with GNPS (2016) (87)
- Ten simple rules for writing and sharing computational analyses in Jupyter Notebooks (2019) (86)
- Links between environment, diet, and the hunter-gatherer microbiome (2018) (85)
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- Microbiome Tools for Forensic Science. (2017) (85)
- Structural basis of human β-cell killing by CD8+ T cells in Type 1 diabetes (2011) (84)
- Visualizing ’omic feature rankings and log-ratios using Qurro (2019) (84)
- Taxon-specific aerosolization of bacteria and viruses in an experimental ocean-atmosphere mesocosm (2018) (84)
- Seasonal variation of postmortem microbial communities (2015) (84)
- The Cladistic Basis for the Phylogenetic Diversity (PD) Measure Links Evolutionary Features to Environmental Gradients and Supports Broad Applications of Microbial Ecology’s “Phylogenetic Beta Diversity” Framework (2009) (84)
- The gut microbiome of nonhuman primates: Lessons in ecology and evolution (2018) (83)
- Diets high in resistant starch increase plasma levels of trimethylamine-N-oxide, a gut microbiome metabolite associated with CVD risk (2016) (82)
- Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort (2020) (82)
- Reporting guidelines for human microbiome research: the STORMS checklist (2021) (82)
- Evaluating the impact of domestication and captivity on the horse gut microbiome (2017) (81)
- Diversity of Rickettsiales in the Microbiome of the Lone Star Tick, Amblyomma americanum (2013) (79)
- A gut-derived metabolite alters brain activity and anxiety behaviour in mice (2022) (79)
- Environmental toxicants in breast milk of Norwegian mothers and gut bacteria composition and metabolites in their infants at 1 month (2019) (79)
- Spatial and temporal variability of the human microbiota. (2012) (79)
- Wastewater sequencing reveals early cryptic SARS-CoV-2 variant transmission (2022) (78)
- Microbiota at Multiple Body Sites during Pregnancy in a Rural Tanzanian Population and Effects of Moringa-Supplemented Probiotic Yogurt (2015) (78)
- The impact of skin care products on skin chemistry and microbiome dynamics (2019) (78)
- Mosquito Microbiome Dynamics, a Background for Prevalence and Seasonality of West Nile Virus (2017) (78)
- Origin of microbial biomineralization and magnetotaxis during the Archean (2017) (78)
- METTL3 regulates viral m6A RNA modification and host cell innate immune responses during SARS-CoV-2 infection (2021) (77)
- Which is more important for classifying microbial communities: who's there or what they can do? (2014) (77)
- From knotted to nested RNA structures: a variety of computational methods for pseudoknot removal. (2008) (77)
- Intermittent Hypoxia and Hypercapnia, a Hallmark of Obstructive Sleep Apnea, Alters the Gut Microbiome and Metabolome (2018) (76)
- Gut microbiome composition in the Hispanic Community Health Study/Study of Latinos is shaped by geographic relocation, environmental factors, and obesity (2019) (76)
- tRNA Creation by Hairpin Duplication (2005) (76)
- Exposure to toxic metals triggers unique responses from the rat gut microbiota (2018) (76)
- Genomic inference of the metabolism and evolution of the archaeal phylum Aigarchaeota (2018) (75)
- Fecal Microbiota Transplant is Highly Effective in Real-World Practice: Initial Results from the FMT National Registry. (2020) (74)
- Current Concepts, Opportunities, and Challenges of Gut Microbiome-Based Personalized Medicine in Nonalcoholic Fatty Liver Disease. (2020) (73)
- Commensal Bacteria and MAMPs Are Necessary for Stress-Induced Increases in IL-1β and IL-18 but Not IL-6, IL-10 or MCP-1 (2012) (73)
- The Early Evolution of the Genetic Code (2000) (73)
- Vertebrate Decomposition Is Accelerated by Soil Microbes (2014) (73)
- Gut microbiome and magnetic resonance spectroscopy study of subjects at ultra-high risk for psychosis may support the membrane hypothesis (2018) (72)
- Suppression of the gut microbiome ameliorates age‐related arterial dysfunction and oxidative stress in mice (2019) (72)
- Consumption of Fermented Foods Is Associated with Systematic Differences in the Gut Microbiome and Metabolome (2020) (71)
- Rhyme or reason: RNA-arginine interactions and the genetic code. (1998) (71)
- The bacterial microbiota in the oral mucosa of rural Amerindians. (2010) (71)
- Interleukin-1β (IL-1β) promotes susceptibility of Toll-like receptor 5 (TLR5) deficient mice to colitis (2011) (70)
- mockrobiota: a Public Resource for Microbiome Bioinformatics Benchmarking (2016) (70)
- Dietary Prebiotics and Bioactive Milk Fractions Improve NREM Sleep, Enhance REM Sleep Rebound and Attenuate the Stress-Induced Decrease in Diurnal Temperature and Gut Microbial Alpha Diversity (2017) (70)
- Context and the human microbiome (2015) (69)
- The human microbiome: eliminating the biomedical/environmental dichotomy in microbial ecology. (2007) (69)
- A preliminary survey of lichen associated eukaryotes using pyrosequencing (2011) (68)
- Uncovering the Horseshoe Effect in Microbial Analyses (2017) (68)
- Dramatic Differences in Gut Bacterial Densities Correlate with Diet and Habitat in Rainforest Ants. (2017) (68)
- Using the gut microbiota as a novel tool for examining colobine primate GI health (2016) (68)
- The Ecology of Microbial Communities Associated with Macrocystis pyrifera (2013) (67)
- Bacterial Community Composition and Dynamics Spanning Five Years in Freshwater Bog Lakes (2017) (66)
- Correcting for Microbial Blooms in Fecal Samples during Room-Temperature Shipping (2017) (66)
- Clinical-Grade Multipotent Adult Progenitor Cells Durably Control Pathogenic T Cell Responses in Human Models of Transplantation and Autoimmunity (2013) (66)
- Advancing the Microbiome Research Community (2014) (66)
- Microbiome Data Accurately Predicts the Postmortem Interval Using Random Forest Regression Models (2018) (66)
- Size, constant sequences, and optimal selection. (2005) (66)
- Walls talk: Microbial biogeography of homes spanning urbanization (2016) (65)
- Impacts of the Human Gut Microbiome on Therapeutics. (2018) (65)
- Human Skin, Oral, and Gut Microbiomes Predict Chronological Age (2020) (63)
- Differential Activation of Hepatic Invariant NKT Cell Subsets Plays a Key Role in Progression of Nonalcoholic Steatohepatitis (2018) (63)
- Patterns of Oral Microbiota Diversity in Adults and Children: A Crowdsourced Population Study (2020) (62)
- Bringing the Dynamic Microbiome to Life with Animations. (2017) (62)
- High-Throughput Wastewater SARS-CoV-2 Detection Enables Forecasting of Community Infection Dynamics in San Diego County (2020) (62)
- Home chemical and microbial transitions across urbanization (2019) (61)
- Insights and inferences about integron evolution from genomic data (2008) (60)
- Patterns in Gut Microbiota Similarity Associated with Degree of Sociality among Sex Classes of a Neotropical Primate (2017) (60)
- Comparison of Fecal Collection Methods for Microbiota Studies in Bangladesh (2017) (60)
- The genomic standards consortium: bringing standards to life for microbial ecology (2011) (59)
- Vertebrate genome evolution: a slow shuffle or a big bang? (1999) (59)
- Disease-modifying therapies alter gut microbial composition in MS (2018) (59)
- Striped UniFrac: enabling microbiome analysis at unprecedented scale (2018) (58)
- Advancing analytical algorithms and pipelines for billions of microbial sequences. (2012) (58)
- Precision medicine in alcoholic and nonalcoholic fatty liver disease via modulating the gut microbiota. (2016) (58)
- Vertebrate Hosts as Islands: Dynamics of Selection, Immigration, Loss, Persistence, and Potential Function of Bacteria on Salamander Skin (2016) (58)
- Comparison of Collection Methods for Fecal Samples for Discovery Metabolomics in Epidemiologic Studies (2016) (58)
- Perinatal Bisphenol A Exposure Induces Chronic Inflammation in Rabbit Offspring via Modulation of Gut Bacteria and Their Metabolites (2017) (58)
- Human Immunodeficiency Virus nef signature sequences are associated with pulmonary hypertension. (2012) (57)
- pH is a good predictor of the distribution of anoxygenic purple phototrophic bacteria in Arctic soils (2014) (57)
- Intermittent Hypoxia and Hypercapnia Accelerate Atherosclerosis, Partially via Trimethylamine‐Oxide (2017) (57)
- Age- and Sex-Dependent Patterns of Gut Microbial Diversity in Human Adults (2019) (57)
- Human β-Cell Killing by Autoreactive Preproinsulin-Specific CD8 T Cells Is Predominantly Granule-Mediated With the Potency Dependent Upon T-Cell Receptor Avidity (2012) (57)
- Rapid, Large-Scale Wastewater Surveillance and Automated Reporting System Enable Early Detection of Nearly 85% of COVID-19 Cases on a University Campus (2021) (56)
- Discrete False-Discovery Rate Improves Identification of Differentially Abundant Microbes (2017) (56)
- Nucleotides adjacent to the ligand-binding pocket are linked to activity tuning in the purine riboswitch. (2013) (56)
- How delivery mode and feeding can shape the bacterial community in the infant gut (2013) (55)
- Multilevel Research Strategies and Biological Systems (2014) (55)
- Finding specific RNA motifs: function in a zeptomole world? (2003) (55)
- Species abundance information improves sequence taxonomy classification accuracy (2018) (55)
- Air pollution exposure is associated with the gut microbiome as revealed by shotgun metagenomic sequencing. (2020) (55)
- Bacterial communities of disease vectors sampled across time, space, and species (2010) (54)
- Vitamin D metabolites and the gut microbiome in older men (2020) (54)
- Abundance of correctly folded RNA motifs in sequence space, calculated on computational grids (2005) (54)
- Coupling Targeted and Untargeted Mass Spectrometry for Metabolome-Microbiome-Wide Association Studies of Human Fecal Samples. (2017) (53)
- Lifestyle chemistries from phones for individual profiling (2016) (53)
- Impact of Ileocecal Resection and Concomitant Antibiotics on the Microbiome of the Murine Jejunum and Colon (2013) (53)
- Auto-deconvolution and molecular networking of gas chromatography–mass spectrometry data (2020) (52)
- Structural basis for diversity in the SAM clan of riboswitches (2014) (52)
- Earth Microbiome Project and Global Systems Biology (2018) (51)
- Measuring adaptation within the genetic code. (2000) (51)
- The Oral and Skin Microbiomes of Captive Komodo Dragons Are Significantly Shared with Their Habitat (2016) (50)
- Coprolites reveal ecological interactions lost with the extinction of New Zealand birds (2018) (50)
- Methods for phylogenetic analysis of microbiome data (2018) (50)
- Effects of the microalgae Chlamydomonas on gastrointestinal health (2020) (50)
- Genetic influences on the human oral microbiome (2017) (50)
- Longitudinal survey of microbiome associated with particulate matter in a megacity (2020) (50)
- High-Throughput Miniaturized 16S rRNA Amplicon Library Preparation Reduces Costs while Preserving Microbiome Integrity (2018) (49)
- Pan-cancer analyses reveal cancer-type-specific fungal ecologies and bacteriome interactions (2022) (49)
- Rob Knight Comparing Microbial Communities UniFrac : a New Phylogenetic Method for (2005) (49)
- Engineering the microbiome for animal health and conservation (2019) (49)
- Bacterial community changes in an industrial algae production system. (2018) (49)
- Changes in bacterial and eukaryotic communities during sewage decomposition in Mississippi river water. (2015) (49)
- Social behaviour and gut microbiota in red‐bellied lemurs (Eulemur rubriventer): In search of the role of immunity in the evolution of sociality (2018) (48)
- From Sample to Multi-Omics Conclusions in under 48 Hours (2016) (47)
- Erratum to: Stability of operational taxonomic units: an important but neglected property for analyzing microbial diversity (2015) (47)
- The RNA Ontology (RNAO): An ontology for integrating RNA sequence and structure data (2009) (47)
- Structure-Based Function Prediction using Graph Convolutional Networks (2019) (46)
- Replenishing our defensive microbes (2013) (46)
- Skin bacteria provide early protection for newly metamorphosed southern leopard frogs (Rana sphenocephala) against the frog-killing fungus, Batrachochytrium dendrobatidis (2015) (46)
- Supervised classification of microbiota mitigates mislabeling errors (2011) (45)
- Guilt by association: the arginine case revisited. (2000) (45)
- Multiple pattern matching: a Markov chain approach (2007) (45)
- Co-Enriching Microflora Associated with Culture Based Methods to Detect Salmonella from Tomato Phyllosphere (2013) (45)
- Bioinformatics assessment of beta-myosin mutations reveals myosin's high sensitivity to mutations. (2008) (44)
- Migraines Are Correlated with Higher Levels of Nitrate-, Nitrite-, and Nitric Oxide-Reducing Oral Microbes in the American Gut Project Cohort (2016) (44)
- Mass Spectrometry-Based Visualization of Molecules Associated with Human Habitats. (2016) (44)
- Deep metagenomics examines the oral microbiome during dental caries, revealing novel taxa and co-occurrences with host molecules (2019) (44)
- ReDU: a framework to find and reanalyze public mass spectrometry data (2020) (43)
- Correction: Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea (2018) (43)
- Analyzing partially randomized nucleic acid pools: straight dope on doping. (2003) (43)
- Context-aware dimensionality reduction deconvolutes gut microbial community dynamics (2020) (43)
- Major shifts in gut microbiota during development and its relationship to growth in ostriches (2019) (43)
- Convergence of human and Old World monkey gut microbiomes demonstrates the importance of human ecology over phylogeny (2019) (43)
- BayesFold: Rational 2° folds that combine thermodynamic, covariation, and chemical data for aligned RNA sequences (2004) (43)
- Microbial Diversity in Clinical Microbiome Studies: Sample Size and Statistical Power Considerations: Statistical Power for Microbiome Studies. (2020) (42)
- Multiple Sclerosis-Associated Changes in the Composition and Immune Functions of Spore-Forming Bacteria (2018) (42)
- Gut microbiome of mothers delivering prematurely shows reduced diversity and lower relative abundance of Bifidobacterium and Streptococcus (2017) (42)
- ghost-tree: creating hybrid-gene phylogenetic trees for diversity analyses (2016) (41)
- Association Between the Gut Microbiota and Blood Pressure in a Population Cohort of 6953 Individuals (2020) (41)
- Multi-omics analyses of the Ulcerative Colitis gut microbiome link Bacteroides vulgatus proteases with disease severity (2021) (41)
- Host and gut microbial tryptophan metabolism and type 2 diabetes: an integrative analysis of host genetics, diet, gut microbiome and circulating metabolites in cohort studies (2021) (41)
- Microbial biogeography and ecology of the mouth and implications for periodontal diseases (2019) (40)
- Gut microbiome in serious mental illnesses: A systematic review and critical evaluation (2019) (40)
- Toward unrestricted use of public genomic data (2019) (40)
- Environmental radiation alters the gut microbiome of the bank vole Myodes glareolus (2018) (40)
- Stress response, gut microbial diversity and sexual signals correlate with social interactions (2016) (40)
- The founding charter of the Genomic Observatories Network (2014) (40)
- Repeated sleep disruption in mice leads to persistent shifts in the fecal microbiome and metabolome (2020) (39)
- Environmental reservoirs of pathogenic mycobacteria across the Ethiopian biogeographical landscape (2017) (39)
- Evaluating Metagenomic Prediction of the Metaproteome in a 4.5-Year Study of a Patient with Crohn's Disease (2019) (39)
- Glycan Degradation (GlyDeR) Analysis Predicts Mammalian Gut Microbiota Abundance and Host Diet-Specific Adaptations (2014) (39)
- The RNA structure alignment ontology. (2009) (39)
- Microbiology of death (2016) (39)
- Neutrophilic proteolysis in the cystic fibrosis lung correlates with a pathogenic microbiome (2019) (39)
- A Microbiome Foundation for the Study of Crohn's Disease. (2017) (38)
- Optimizing sequencing protocols for leaderboard metagenomics by combining long and short reads (2019) (38)
- Carcass mass has little influence on the structure of gravesoil microbial communities (2015) (38)
- Age- and Sex-Dependent Patterns of Gut Microbial Diversity in Human Adults. (2019) (38)
- Metagenomic covariation along densely sampled environmental gradients in the Red Sea (2016) (38)
- Challenges in the construction of knowledge bases for human microbiome-disease associations (2019) (38)
- Gut microbiota in wild and captive Guizhou snub‐nosed monkeys, Rhinopithecus brelichi (2019) (38)
- MetaMiner: A Scalable Peptidogenomics Approach for Discovery of Ribosomal Peptide Natural Products with Blind Modifications from Microbial Communities. (2019) (37)
- Mortality Risk Profiling of Staphylococcus aureus Bacteremia by Multi-omic Serum Analysis Reveals Early Predictive and Pathogenic Signatures (2020) (36)
- Niche partitioning of a pathogenic microbiome driven by chemical gradients (2018) (35)
- Ultralow-input single-tube linked-read library method enables short-read second-generation sequencing systems to routinely generate highly accurate and economical long-range sequencing information (2020) (35)
- Chemically informed analyses of metabolomics mass spectrometry data with Qemistree (2020) (35)
- Insight into the function and evolution of the Wood–Ljungdahl pathway in Actinobacteria (2021) (35)
- Error Minimization and Coding Triplet/Binding Site Associations Are Independent Features of the Canonical Genetic Code (2005) (35)
- Xenobiotics and the human gut microbiome: metatranscriptomics reveal the active players. (2013) (35)
- Turning Participatory Microbiome Research into Usable Data: Lessons from the American Gut Project (2016) (35)
- Genomic Standards Consortium Projects (2014) (34)
- SARS-CoV-2 detection status associates with bacterial community composition in patients and the hospital environment (2021) (34)
- Challenges in benchmarking metagenomic profilers (2020) (34)
- Stable tRNA-based phylogenies using only 76 nucleotides. (2010) (34)
- Simple, recurring RNA binding sites for L-arginine. (2010) (34)
- Triplicate PCR reactions for 16S rRNA gene amplicon sequencing are unnecessary. (2019) (34)
- Associations of healthy food choices with gut microbiota profiles (2021) (34)
- Metagenomics-Based, Strain-Level Analysis of Escherichia coli From a Time-Series of Microbiome Samples From a Crohn's Disease Patient (2018) (34)
- Detecting coevolution without phylogenetic trees? Tree-ignorant metrics of coevolution perform as well as tree-aware metrics (2008) (34)
- Exploring the Composition and Functions of Plastic Microbiome Using Whole-Genome Sequencing. (2021) (33)
- Creating a 3D microbial and chemical snapshot of a human habitat (2018) (33)
- A standardized, extensible framework for optimizing classification improves marker-gene taxonomic assignments (2015) (32)
- Sharing and archiving nucleic acid structure mapping data. (2011) (32)
- Single-Cell Transcriptomics Reveal a Correlation between Genome Architecture and Gene Family Evolution in Ciliates (2019) (32)
- High-Resolution Longitudinal Dynamics of the Cystic Fibrosis Sputum Microbiome and Metabolome through Antibiotic Therapy (2020) (32)
- Meeting Report: Fungal ITS Workshop (October 2012) (2013) (32)
- RNASTAR: an RNA STructural Alignment Repository that provides insight into the evolution of natural and artificial RNAs. (2012) (31)
- Closure of the NCBI SRA and implications for the long-term future of genomics data storage (2011) (31)
- Expanding magnetic organelle biogenesis in the domain Bacteria (2020) (31)
- Guiding longitudinal sampling in IBD cohorts (2017) (31)
- Correction: Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea (2018) (31)
- Uniform Manifold Approximation and Projection (UMAP) Reveals Composite Patterns and Resolves Visualization Artifacts in Microbiome Data (2021) (31)
- Triclosan leads to dysregulation of the metabolic regulator FGF21 exacerbating high fat diet-induced nonalcoholic fatty liver disease (2020) (31)
- Dietary effects on human gut microbiome diversity q (2015) (31)
- The murine vaginal microbiota and its perturbation by the human pathogen group B Streptococcus (2018) (31)
- Do universal codon-usage patterns minimize the effects of mutation and translation error? (2005) (30)
- Human microbiome science: vision for the future, Bethesda, MD, July 24 to 26, 2013 (2014) (29)
- Bacterial modification of the host glycosaminoglycan heparan sulfate modulates SARS-CoV-2 infectivity (2020) (29)
- Prevalence and genetic diversity of Blastocystis in family units living in the United States. (2016) (29)
- Microbial Ecology of Atlantic Salmon (Salmo salar) Hatcheries: Impacts of the Built Environment on Fish Mucosal Microbiota (2020) (29)
- Gut Instinct: Creating Scientific Theories with Online Learners (2017) (28)
- Eggshell Bacterial Load Is Related to Antimicrobial Properties of Feathers Lining Barn Swallow Nests (2014) (28)
- Translating the human microbiome (2013) (28)
- Experimental Chagas disease-induced perturbations of the fecal microbiome and metabolome (2018) (28)
- Trace Evidence Potential in Postmortem Skin Microbiomes: From Death Scene to Morgue (2018) (27)
- Digitizing mass spectrometry data to explore the chemical diversity and distribution of marine cyanobacteria and algae (2017) (27)
- Secondary structure information does not improve OTU assignment for partial 16s rRNA sequences (2011) (27)
- Calour: an Interactive, Microbe-Centric Analysis Tool (2019) (27)
- Host-Associated and Free-Living Phage Communities Differ Profoundly in Phylogenetic Composition (2011) (27)
- Gut microbiome in Schizophrenia: Altered functional pathways related to immune modulation and atherosclerotic risk (2020) (27)
- Twisted Tales: Insights into Genome Diversity of Ciliates Using Single-Cell ‘Omics (2018) (27)
- Links between gut microbiome composition and fatty liver disease in a large population sample (2020) (27)
- Human microbiome science: vision for the future, (2014) (27)
- redbiom: a Rapid Sample Discovery and Feature Characterization System (2019) (27)
- Emerging Trends for Microbiome Analysis: From Single-Cell Functional Imaging to Microbiome Big Data (2017) (26)
- Emergence of an early SARS-CoV-2 epidemic in the United States (2021) (26)
- Intermittent Hypoxia and Hypercapnia Reproducibly Change the Gut Microbiome and Metabolome across Rodent Model Systems (2019) (26)
- Taxonomic signatures of cause-specific mortality risk in human gut microbiome (2021) (25)
- SHOGUN: a modular, accurate and scalable framework for microbiome quantification (2020) (25)
- Bacterial density rather than diversity correlates with hatching success across different avian species (2018) (25)
- Assessment of the microbiome during bacteriophage therapy in combination with systemic antibiotics to treat a case of staphylococcal device infection (2021) (25)
- Muegge Mammalian Phylogeny and Within Humans Diet Drives Convergence in Gut Microbiome Functions Across (2011) (25)
- Effects of field conditions on fecal microbiota. (2016) (25)
- Identifying and Predicting Novelty in Microbiome Studies (2018) (25)
- Erratum: Strains, functions and dynamics in the expanded Human Microbiome Project (2017) (25)
- Transcriptional characterization of Vibrio fischeri during colonization of juvenile Euprymna scolopes (2017) (25)
- Using the nucleotide substitution rate matrix to detect horizontal gene transfer (2006) (25)
- Using machine learning to identify major shifts in human gut microbiome protein family abundance in disease (2016) (24)
- Publisher Correction: The gut–liver axis and the intersection with the microbiome (2018) (24)
- Taxonomic Signatures of Long-Term Mortality Risk in Human Gut Microbiota (2020) (24)
- Combined phylogenetic and genomic approaches for the high-throughput study of microbial habitat adaptation. (2011) (24)
- Mass Spectrometry-Based Chemical Cartography of a Cardiac Parasitic Infection. (2017) (24)
- SnapShot: The Human Microbiome (2014) (24)
- Collaborative cloud-enabled tools allow rapid, reproducible biological insights (2012) (24)
- Temporal, Environmental, and Biological Drivers of the Mucosal Microbiome in a Wild Marine Fish, Scomber japonicus (2019) (24)
- Keemei: cloud-based validation of tabular bioinformatics file formats in Google Sheets (2016) (24)
- Defining Host Responses during Systemic Bacterial Infection through Construction of a Murine Organ Proteome Atlas. (2018) (23)
- The Urinary Tract Microbiome in Older Women Exhibits Host Genetic and Environmental Influences. (2020) (23)
- Ten Simple Rules for Reproducible Research in Jupyter Notebooks (2018) (23)
- Towards large-cohort comparative studies to define the factors influencing the gut microbial community structure of ASD patients (2015) (23)
- SitePainter: a tool for exploring biogeographical patterns (2011) (23)
- Microbial ecology of Atlantic salmon, Salmo salar, hatcheries: impacts of the built environment on fish mucosal microbiota (2019) (23)
- Early-life gut dysbiosis linked to juvenile mortality in ostriches (2020) (22)
- Benchmarking urine storage and collection conditions for evaluating the female urinary microbiome (2019) (22)
- Exploration of the Germline Genome of the Ciliate Chilodonella uncinata through Single-Cell Omics (Transcriptomics and Genomics) (2018) (22)
- Dietary factors, gut microbiota, and serum trimethylamine-N-oxide associated with cardiovascular disease in the Hispanic Community Health Study/Study of Latinos. (2020) (22)
- Household paired design reduces variance and increases power in multi-city gut microbiome study in multiple sclerosis (2020) (22)
- Mass Spectrometry Based Molecular 3D-Cartography of Plant Metabolites (2017) (22)
- Next steps in studying the human microbiome and health in prospective studies, Bethesda, MD, May 16–17, 2017 (2018) (22)
- The unifrac significance test is sensitive to tree topology (2015) (22)
- What is the value of a food and drug administration investigational new drug application for fecal microbiota transplantation to treat Clostridium difficile Infection? (2014) (21)
- Comparison of the vaginal microbial communities in women with recurrent genital HSV receiving acyclovir intravaginal rings. (2014) (21)
- EMPress Enables Tree-Guided, Interactive, and Exploratory Analyses of Multi-omic Data Sets (2021) (21)
- The Earth Microbiome Project: The Meeting Report for the 1st International Earth Microbiome Project Conference, Shenzhen, China, June 13th-15th 2011 (2011) (21)
- Author Correction: Regional variation limits applications of healthy gut microbiome reference ranges and disease models (2018) (21)
- Microbiota succession throughout life from the cradle to the grave (2022) (21)
- Avoiding Pandemic Fears in the Subway and Conquering the Platypus (2016) (21)
- Chemically-informed Analyses of Metabolomics Mass Spectrometry Data with Qemistree (2020) (21)
- Gut microbiome of multiple sclerosis patients and paired household healthy controls reveal associations with disease risk and course (2022) (21)
- The Hospital Microbiome Project: Meeting Report for the 1st Hospital Microbiome Project Workshop on sampling design and building science measurements, Chicago, USA, June 7th-8th 2012 (2013) (21)
- Antibiotic discovery is a walk in the park (2016) (21)
- Gut Microbiome Composition Is Predictive of Incident Type 2 Diabetes in a Population Cohort of 5,572 Finnish Adults (2021) (20)
- Identifying qualitative effects of different grazing types on below-ground communities and function in a long-term field experiment. (2015) (20)
- Ancient human oral plaque preserves a wealth of biological data (2014) (20)
- Are microbiome studies ready for hypothesis-driven research? (2018) (20)
- Natural and artificial RNAs occupy the same restricted region of sequence space. (2010) (20)
- Naturalization of the microbiota developmental trajectory of Cesarean-born neonates after vaginal seeding. (2021) (20)
- Satellite remote sensing data can be used to model marine microbial metabolite turnover (2014) (19)
- Intestinal transgene delivery with native E. coli chassis allows persistent physiological changes (2021) (19)
- Genome-Wide Tuning of Protein Expression Levels to Rapidly Engineer Microbial Traits. (2015) (19)
- Microbial communities associated with decomposing corpses (2017) (19)
- Gene discovery from a pilot study of the transcriptomes from three diverse microbial eukaryotes: Corallomyxa tenera, Chilodonella uncinata, and Subulatomonas tetraspora (2012) (19)
- Microbial effects of livestock manure fertilization on freshwater aquaculture ponds rearing tilapia (Oreochromis shiranus) and North African catfish (Clarias gariepinus) (2018) (19)
- Reduced iron in diabetic wounds: An oxidative stress-dependent role for STEAP3 in extracellular matrix deposition and remodelling. (2019) (19)
- Compositional and genetic alterations in Graves’ disease gut microbiome reveal specific diagnostic biomarkers (2021) (18)
- Ruminiclostridium 5, Parabacteroides distasonis, and bile acid profile are modulated by prebiotic diet and associate with facilitated sleep/clock realignment after chronic disruption of rhythms (2021) (18)
- Author response: Cohabiting family members share microbiota with one another and with their dogs (2013) (18)
- Is there convergence of gut microbes in blood-feeding vertebrates? (2019) (18)
- TopiaryExplorer: visualizing large phylogenetic trees with environmental metadata (2011) (18)
- Key challenges in proteomics and proteoinformatics (2005) (18)
- OGUs enable effective, phylogeny-aware analysis of even shallow metagenome community structures (2021) (18)
- Gastrointestinal Surgery for Inflammatory Bowel Disease Persistently Lowers Microbiome and Metabolome Diversity (2020) (18)
- The microbiome and prostate cancer (2021) (17)
- Comparison of Oral Collection Methods for Studies of Microbiota (2018) (17)
- Repository-scale Co- and Re-analysis of Tandem Mass Spectrometry Data (2019) (17)
- Wildlife-microbiome interactions and disease: exploring opportunities for disease mitigation across ecological scales (2018) (17)
- Optimizing taxonomic classification of marker gene sequences (2017) (17)
- Can Your Microbiome Tell You What to Eat? (2015) (17)
- Type I IFNs and CD8 T cells increase intestinal barrier permeability after chronic viral infection (2020) (17)
- Diet and feeding pattern modulate diurnal dynamics of the ileal microbiome and transcriptome (2022) (17)
- Leveling up citizen science (2020) (17)
- Leukotriene B4-receptor-1 mediated host response shapes gut microbiota and controls colon tumor progression (2017) (17)
- Molecular and Microbial Microenvironments in Chronically Diseased Lungs Associated with Cystic Fibrosis (2019) (16)
- Candidate probiotic Lactiplantibacillus plantarum HNU082 rapidly and convergently evolves within human, mice, and zebrafish gut but differentially influences the resident microbiome (2021) (16)
- BayesFold: rational 2 degrees folds that combine thermodynamic, covariation, and chemical data for aligned RNA sequences. (2004) (16)
- MASST: A Web-based Basic Mass Spectrometry Search Tool for Molecules to Search Public Data (2019) (16)
- Parallel Mapping of Antibiotic Resistance Alleles in Escherichia coli (2016) (16)
- From molecules to dynamic biological communities (2013) (16)
- Context-aware deconvolution of cell–cell communication with Tensor-cell2cell (2021) (16)
- Unlocking capacities of genomics for the COVID-19 response and future pandemics (2022) (16)
- Early prediction of incident liver disease using conventional risk factors and gut-microbiome-augmented gradient boosting (2022) (16)
- Reports of the death of the gene are greatly exaggerated (2007) (16)
- Multiple-Disease Detection and Classification across Cohorts via Microbiome Search (2020) (15)
- Microbial Skin Inhabitants: Friends Forever (2016) (15)
- Tools, techniques, and challenges Microbial community profiling for human microbiome projects: (2009) (15)
- Correction: The Ecology of Microbial Communities Associated with Macrocystis pyrifera (2013) (15)
- Intermittent Hypoxia and Hypercapnia Alter Diurnal Rhythms of Luminal Gut Microbiome and Metabolome (2021) (15)
- Ancient Thali Diet: Gut Microbiota, Immunity, and Health (2018) (15)
- The genetic basis for adaptation of model-designed syntrophic co-cultures (2019) (15)
- A Microbiome-Based Index for Assessing Skin Health and Treatment Effects for Atopic Dermatitis in Children (2019) (15)
- Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases (2019) (15)
- Microbial context predicts SARS-CoV-2 prevalence in patients and the hospital built environment (2020) (15)
- Information, probability, and the abundance of the simplest RNA active sites. (2008) (14)
- RNA structure prediction from evolutionary patterns of nucleotide composition (2009) (14)
- The Human Microbiome: Getting Personal: Each of us harbors a unique microbiome, and its characteristics play an important role in differentiating us from one another (2014) (14)
- Influence of Intermittent Hypoxia/Hypercapnia on Atherosclerosis, Gut Microbiome, and Metabolome (2021) (14)
- Reproducibility, stability, and accuracy of microbial profiles by fecal sample collection method in three distinct populations (2019) (14)
- Publisher Correction: Enterotypes in the landscape of gut microbial community composition (2018) (14)
- Gut dysbiosis is a feature of MS and it is characterized by bacteria able to regulate lymphocyte differentiation in vitro (2016) (14)
- A Sensitive, Rapid, and Portable CasRx-based Diagnostic Assay for SARS-CoV-2 (2020) (14)
- A Multi-Omics Characterization of the Natural Product Potential of Tropical Filamentous Marine Cyanobacteria (2021) (14)
- Associations of fecal microbial profiles with breast cancer and nonmalignant breast disease in the Ghana Breast Health Study (2021) (14)
- The Scope of Selection (2004) (13)
- Early life gut microbiota is associated with rapid infant growth in Hispanics from Southern California (2021) (13)
- Wastewater and surface monitoring to detect COVID-19 in elementary school settings: The Safer at School Early Alert project (2021) (13)
- A posteriori dietary patterns better explain variations of the gut microbiome than individual markers in the American Gut Project (2021) (13)
- Quantifying Live Microbial Load in Human Saliva Samples over Time Reveals Stable Composition and Dynamic Load (2021) (13)
- Evaluation of the Effect of Storage Methods on Fecal, Saliva, and Skin Microbiome Composition (2021) (13)
- Ground beef microbiome changes with antimicrobial decontamination interventions and product storage (2019) (13)
- Association of Loneliness and Wisdom With Gut Microbial Diversity and Composition: An Exploratory Study (2021) (13)
- Technology and techniques for microbial ecology via DNA sequencing. (2014) (13)
- Emergence of an early SARS-CoV-2 epidemic in the United States (2021) (13)
- DivergentSet, a Tool for Picking Non-redundant Sequences from Large Sequence Collections* (2006) (13)
- Metabolome-Informed Microbiome Analysis Refines Metadata Classifications and Reveals Unexpected Medication Transfer in Captive Cheetahs (2019) (13)
- Wastewater sequencing uncovers early, cryptic SARS-CoV-2 variant transmission (2021) (12)
- Enhancing untargeted metabolomics using metadata-based source annotation. (2022) (12)
- Genetics of human gut microbiome composition (2020) (12)
- Altered Gut Microbiota and Host Metabolite Profiles in Women With Human Immunodeficiency Virus (2019) (12)
- 257: Preliminary observations on the microbial phylogeny of the oral, vaginal, and rectal microbiome in gestational diabetes and healthy pregnancies (2011) (12)
- Occurrence of the aminoacyl‐tRNA synthetases in high‐molecular weight complexes correlates with the size of substrate amino acids (2005) (12)
- Altered Gut Microbiota and Host Metabolite Profiles in HIV-infected Women. (2019) (12)
- Nucleotides that are essential but not conserved; a sufficient L-tryptophan site in RNA. (2010) (12)
- The development of gut microbiota in ostriches and its association with juvenile growth (2018) (12)
- A distinct immunogenic region of glutamic acid decarboxylase 65 is naturally processed and presented by human islet cells to cytotoxic CD8 T cells (2015) (12)
- Development of a Rapid and Sensitive CasRx-Based Diagnostic Assay for SARS-CoV-2 (2021) (12)
- Enhanced Characterization of Drug Metabolism and the Influence of the Intestinal Microbiome: A Pharmacokinetic, Microbiome, and Untargeted Metabolomics Study (2020) (12)
- Vitamin B-12 and the Gastrointestinal Microbiome: A Systematic Review. (2021) (11)
- Activating and inhibiting connections in biological network dynamics (2008) (11)
- Nutrition and the Gut Microbiota in 10- to 18-Month-Old Children Living in Urban Slums of Mumbai, India (2020) (11)
- Early prediction of liver disease using conventional risk factors and gut microbiome-augmented gradient boosting (2020) (11)
- Docent: transforming personal intuitions to scientific hypotheses through content learning and process training (2018) (11)
- Comparison of methods for estimating the nucleotide substitution matrix (2008) (11)
- The “Minimum Information about an ENvironmental Sequence” (MIENS) specification (2010) (11)
- Association of Body Mass Index with Fecal Microbial Diversity and Metabolites in the Northern Finland Birth Cohort (2020) (11)
- Subgingival Microbiota and Longitudinal Glucose Change: The Oral Infections, Glucose Intolerance and Insulin Resistance Study (ORIGINS) (2019) (11)
- A Distinct Microbiome Signature in Posttreatment Lyme Disease Patients (2020) (11)
- A data analysis and coordination center for the human microbiome project (2010) (10)
- Effects of processed meat and drinking water nitrate on oral and fecal microbial populations in a controlled feeding study. (2021) (10)
- Coinfection and infection duration shape how pathogens affect the African buffalo gut microbiota (2020) (10)
- Reference data based insights expand understanding of human metabolomes (2020) (10)
- Species-level functional profiling of metagenomes and metatranscriptomes (2018) (10)
- Erratum: Ultralow-input single-tube linked-read library method enables short-read second-generation sequencing systems to routinely generate highly accurate and economical long-range sequencing information. (2021) (10)
- Correction for Gonzalez et al., “Migraines Are Correlated with Higher Levels of Nitrate-, Nitrite-, and Nitric Oxide-Reducing Oral Microbes in the American Gut Project Cohort” (2017) (10)
- Characterization of the total and viable bacterial and fungal communities associated with the International Space Station surfaces (2019) (10)
- Ultra-low input single tube linked-read library method enables short-read NGS systems to generate highly accurate and economical long-range sequencing information for de novo genome assembly and haplotype phasing (2019) (10)
- Two hundred and fifty-four metagenome-assembled bacterial genomes from the bank vole gut microbiota (2020) (10)
- Does protein structure influence trypsin miscleavage? (2005) (10)
- Euphorbia plant latex is inhabited by diverse microbial communities. (2015) (10)
- Plant Selenium Hyperaccumulation Affects Rhizosphere: Enhanced Species Richness and Altered Species Composition (2018) (9)
- The Microbiome and Its Potential for Pharmacology. (2019) (9)
- Pathological rate matrices: from primates to pathogens (2008) (9)
- A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities (2021) (9)
- Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy (2022) (9)
- The Microbiome and Big Data. (2017) (9)
- Why Microbiome Treatments Could Pay Off Soon (2015) (9)
- Trait-like vulnerability of higher-order cognition and ability to maintain wakefulness during combined sleep restriction and circadian misalignment. (2019) (9)
- Paroxetine Administration Affects Microbiota and Bile Acid Levels in Mice (2020) (9)
- Nutritional Interventions and the Gut Microbiome in Children. (2021) (9)
- Feasibility of using alternative swabs and storage solutions for paired SARS-CoV-2 detection and microbiome analysis in the hospital environment (2020) (9)
- ORIGINS OF THE GENETIC CODE: The Escaped (2005) (9)
- Characterization of CA-MRSA TCH1516 exposed to nafcillin in bacteriological and physiological media (2019) (9)
- A lightweight, scalable grid computing framework for parallel bioinformatics applications (2005) (9)
- Nonalcoholic Steatohepatitis and HCC in a Hyperphagic Mouse Accelerated by Western Diet (2021) (9)
- Tests of a Stereochemical Genetic Code (2013) (9)
- Red Sea SAR11 and Prochlorococcus Single-Cell Genomes Reflect Globally Distributed Pangenomes (2019) (9)
- Erratum: Inflammation-induced IgA+ cells dismantle anti-liver cancer immunity (2017) (9)
- Standardized multi-omics of Earth’s microbiomes reveals microbial and metabolite diversity (2022) (9)
- Pigs, Unlike Mice, Have Two Distinct Colonic Stem Cell Populations Similar to Humans That Respond to High-Calorie Diet prior to Insulin Resistance (2017) (9)
- Acetate reprograms gut microbiota during alcohol consumption (2022) (9)
- Associations of the Fecal Microbial Proteome Composition and Proneness to Diet-induced Obesity* (2019) (9)
- CD8 T cells drive anorexia, dysbiosis, and blooms of a commensal with immunosuppressive potential after viral infection (2020) (8)
- Adaptive Evolution of the Genetic Code (2004) (8)
- Erratum for Linz et al., “Bacterial Community Composition and Dynamics Spanning Five Years in Freshwater Bog Lakes” (2017) (8)
- The Southern Bluefin Tuna Mucosal Microbiome Is Influenced by Husbandry Method, Net Pen Location, and Anti-parasite Treatment (2020) (8)
- Early microbial markers of periodontal and cardiometabolic diseases in ORIGINS (2022) (8)
- Microbiome for Mars: surveying microbiome connections to healthcare with implications for long-duration human spaceflight, virtual workshop, July 13, 2020 (2021) (8)
- A comparison of six DNA extraction protocols for 16S, ITS, and shotgun metagenomic sequencing of microbial communities (2022) (8)
- Analysis of SARS-CoV-2 RNA Persistence across Indoor Surface Materials Reveals Best Practices for Environmental Monitoring Programs (2021) (8)
- Hopanoid‐producing bacteria in the Red Sea include the major marine nitrite oxidizers (2018) (8)
- Differing salivary microbiome diversity, community and diurnal rhythmicity in association with affective state and peripheral inflammation in adults (2020) (8)
- Meeting report: GSC M5 roundtable at the 13th International Society for Microbial Ecology meeting in Seattle, WA, USA August 22-27, 2010 (2010) (8)
- Severe acute respiratory coronavirus virus 2 (SARS-CoV-2) screening among symptom-free healthcare workers (2021) (8)
- Geography and location are the primary drivers (2016) (8)
- Boulder ALignment Editor (ALE): a web-based RNA alignment tool (2011) (8)
- Impacts of the Marine Hatchery Built Environment, Water and Feed on Mucosal Microbiome Colonization Across Ontogeny in Yellowtail Kingfish, Seriola lalandi (2021) (7)
- The Gut Microbiome Modifies the Association between a Mediterranean Diet and Diabetes in US Hispanic / Latino Population. (2021) (7)
- CodonExplorer: an online tool for analyzing codon usage and sequence composition, scaling from genes to genomes (2009) (7)
- Author Correction: Farm-like indoor microbiota in non-farm homes protects children from asthma development (2019) (7)
- EMPress enables tree-guided, interactive, and exploratory analyses of multi-omic datasets (2020) (7)
- Markers of Gut Barrier Function and Microbial Translocation Associate with Lower Gut Microbial Diversity in People with HIV (2021) (7)
- Effects of Immunization With the Soil-Derived Bacterium Mycobacterium vaccae on Stress Coping Behaviors and Cognitive Performance in a “Two Hit” Stressor Model (2021) (7)
- Microbial co-occurrence complicates associations of gut microbiome with US immigration, dietary intake and obesity (2021) (7)
- Depression in Individuals Coinfected with HIV and HCV Is Associated with Systematic Differences in the Gut Microbiome and Metabolome (2020) (7)
- The emergence of microbiome centres (2019) (7)
- Organ-level protein networks as a reference for the host effects of the microbiome (2020) (7)
- Faecal transplants (2015) (7)
- Handwashing and Detergent Treatment Greatly Reduce SARS-CoV-2 Viral Load on Halloween Candy Handled by COVID-19 Patients (2020) (7)
- The pediatric intestinal mucosal microbiome remains altered after clinical resolution of inflammatory and ischemic disease. (2016) (6)
- Efficient computation of Faith's phylogenetic diversity with applications in characterizing microbiomes (2021) (6)
- BayesTime: Bayesian Functional Principal Components for Sparse Longitudinal Data. (2020) (6)
- Using microbiome tools for estimating the postmortem interval (2020) (6)
- Expanding our Understanding of the Role of the Microbiome in Health and Disease. (2018) (6)
- Intratumoral bacteria generate a new class of therapeutically relevant tumor antigens in melanoma. (2021) (6)
- Feasibility of SARS-CoV-2 virus detection from consumer-grade cotton swabs (2020) (6)
- The ViReflow pipeline enables user friendly large scale viral consensus genome reconstruction (2022) (6)
- Profiling the effect of nafcillin on HA-MRSA D712 using bacteriological and physiological media (2019) (6)
- Redrawing therapeutic boundaries: microbiota and cancer. (2021) (6)
- GPU-Accelerated Discovery of Pathogen-Derived Molecular Mimics of a T-Cell Insulin Epitope (2020) (6)
- Fecal Microbiome Composition Does Not Predict Diet‐Induced TMAO Production in Healthy Adults (2021) (6)
- Tracking Human Gut Microbiome Changes Resulting from a Colonoscopy (2017) (6)
- Estimate of the abundance of cardiomyopathic mutations in the β-myosin gene. (2010) (6)
- Microbiome Studies of Carrion Decomposition (2015) (6)
- TaskSpaces: A Software Framework for Parallel Bioinformatics on Computational Grids (2005) (5)
- Reply to Wang and Chen: An ancient origin of magnetotactic bacteria (2017) (5)
- A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities (2020) (5)
- The Fecal Microbiome and Metabolome of Pitt Hopkins Syndrome, a Severe Autism Spectrum Disorder (2021) (5)
- Chemical Impacts of the Microbiome Across Scales Reveal Novel Conjugated Bile Acids (2019) (5)
- A Pilot Study of Microbial Succession in Human Rib Skeletal Remains during Terrestrial Decomposition (2021) (5)
- Algorithmic Learning for Auto-deconvolution of GC-MS Data to Enable Molecular Networking within GNPS (2020) (5)
- Dramatic differences in gut bacterial densities help to explain the relationship between diet and habitat in rainforest ants (2017) (5)
- Multi-omics profiling of Earth’s biomes reveals that microbial and metabolite composition are shaped by the environment (2021) (5)
- Key challenges in proteomics and proteoinformatics. Progress in proteins. (2005) (5)
- The effect of legume supplementation on the gut microbiota in rural Malawian infants aged 6 to 12 months. (2020) (5)
- Author Correction: Gut microbiome composition in the Hispanic Community Health Study/Study of Latinos is shaped by geographic relocation, environmental factors, and obesity (2020) (5)
- Clean room microbiome complexity impacts planetary protection bioburden (2021) (5)
- Ensemble dispatching on an IBM Blue Gene/L for a bioinformatics knowledge environment (2009) (5)
- Short Course in the Microbiome (2015) (5)
- Supervised classi¢cation of human microbiota (2011) (5)
- Absence of CCR2 reduces spontaneous intestinal tumorigenesis in the ApcMin/+ mouse model (2021) (5)
- In silico and ex vivo approaches indicate immune pressure on capsid and non-capsid regions of coxsackie B viruses in the human system (2018) (5)
- 102 Dupilumab Decreases Staphylococcus aureus Colonization and Increases Microbial Diversity in Patients With Atopic Dermatitis (2019) (5)
- Fecal Microbiome in Epidemiologic Studies—Response (2016) (5)
- Wastewater surveillance for public health (2023) (5)
- Individuals with substance use disorders have a distinct oral microbiome pattern (2021) (4)
- Microbe-Metabolite Associations Linked to the Rebounding Murine Gut Microbiome Postcolonization with Vancomycin-Resistant Enterococcus faecium (2019) (4)
- Meeting report of the RNA Ontology Consortium January 8-9, 2011 (2011) (4)
- Microbiome and Metagenome Analyses of a Closed Habitat during Human Occupation (2019) (4)
- Controlled Feeding Experiments Demonstrate the Impact of Diet on the Composition of the Human Gut Microbiome (2011) (4)
- Cancer's second genome: Microbial cancer diagnostics and redefining clonal evolution as a multispecies process (2022) (4)
- Animal models for understanding microbial decomposition of human remains (2018) (4)
- Phylogenetic and ecological factors impact the gut microbiota of two Neotropical primate species (2015) (4)
- MetaRiPPquest: A Peptidogenomics Approach for the Discovery of Ribosomally Synthesized and Post-translationally Modified Peptides (2017) (4)
- Erratum to: Diet Versus Phylogeny: a Comparison of Gut Microbiota in Captive Colobine Monkey Species (2017) (4)
- Engineered bacteria detect tumor DNA (2021) (4)
- Neuronal Activation of the Gastrointestinal Tract Shapes the Gut Environment in Mice (2021) (4)
- Using QIIME to Evaluate the Microbial Communities Within Hydrocarbon Environments (2015) (4)
- Effect of oral versus injectable disease-modifying therapies on the epigenome-wide DNA methylation and gut microbiota in multiple sclerosis patients (2016) (4)
- Is the Genetic Code Really a Frozen Accident? New Evidence from in Vitro Selection (1999) (4)
- Let researchers try new paths (2016) (4)
- The MS Microbiome Consortium (MSMC): an academic multi-disciplinary collaborative effort to elucidate the role of the gut microbiota in MS (P2.205) (2015) (4)
- 641: Depth of 16S rRNA sequencing required for characterization of microbial composition in the vaginal, oral, and rectal compartments in pregnancy (2011) (4)
- Consent insufficient for data release—Response (2019) (4)
- CodonExplorer: an interactive online database for the analysis of codon usage and sequence composition. (2009) (4)
- SARS-CoV-2 Infection Among Symptom-Free Healthcare Workers (2020) (4)
- Implementation of Practical Surface SARS-CoV-2 Surveillance in School Settings (2022) (4)
- Reduced gut microbiome diversity in people with HIV who have distal neuropathic pain. (2021) (4)
- Evaluating Organism-Wide Changes in the Metabolome and Microbiome following a Single Dose of Antibiotic (2020) (4)
- Changes in Microbial Ecology After Fecal Microbiota Transplantation for Recurrent C. Difficile Infection Depends on Underlying Inflammatory Bowel Disease: 2016 ACG Presidential Poster Award: 159 (2016) (4)
- A Scale-Free, Fully Connected Global Transition Network Underlies Known Microbiome Diversity (2020) (4)
- The oral microbiome and breast cancer and nonmalignant breast disease, and its relationship with the fecal microbiome in the Ghana Breast Health Study (2022) (4)
- Translational medicine and the human microbiome (2010) (3)
- Multi-omics profiling of Earth’s biomes reveals patterns of diversity and co-occurrence in microbial and metabolite composition across environments (2022) (3)
- The Human Microbiome: Getting Personal Eachofusharborsauniquemicrobiome,anditscharacteristicsplayanimportant roleindifferentiatingusfromoneanother (2014) (3)
- Erratum to: Diet Versus Phylogeny: a Comparison of Gut Microbiota in Captive Colobine Monkey Species (2018) (3)
- Early-life gut dysbiosis linked to juvenile mortality in ostriches (2020) (3)
- Feasibility of using alternative swabs and storage solutions for paired SARS-CoV-2 detection and microbiome analysis in the hospital environment (2021) (3)
- A semiparametric model for between‐subject attributes: Applications to beta‐diversity of microbiome data (2021) (3)
- 662 High Fat Diet Determines the Composition of the Gut Microbiome Independent of Host Genotype and Phenotype (2009) (3)
- Docent (2018) (3)
- Intestinal adaptation in proximal and distal segments: Two epithelial responses diverge after intestinal separation (2017) (3)
- MotifCluster: an interactive online tool for clustering and visualizing sequences using shared motifs (2008) (3)
- Salivary bacterial signatures in depression-obesity comorbidity are associated with neurotransmitters and neuroactive dipeptides (2021) (3)
- The influence of microbiota on the adaptive immune response in MS (2015) (3)
- Identifying the effect of vancomycin on health care–associated methicillin-resistant Staphylococcus aureus strains using bacteriological and physiological media (2021) (3)
- Galileo: Citizen-led Experimentation Using a Social Computing System (2021) (3)
- Multiplex growth rate phenotyping of synthetic mutants in selection to engineer glucose and xylose co‐utilization in Escherichia coli (2017) (3)
- Genomic mutations within the host microbiome: Adaptive evolution or purifying selection (2022) (3)
- Porting and optimizing UniFrac for GPUs (2020) (3)
- The Host-Microbiome Response to Hyperbaric Oxygen Therapy in Ulcerative Colitis Patients (2022) (3)
- Perinatal bisphenol‐A exposure causes colonic and liver inflammation in rabbit pups and alters gut bacterial and metabolite profiles (2015) (3)
- Senior management teams for new shires (2008) (3)
- Insulin-regulated serine and lipid metabolism drive peripheral neuropathy (2023) (3)
- Menopause Is Associated with an Altered Gut Microbiome and Estrobolome, with Implications for Adverse Cardiometabolic Risk in the Hispanic Community Health Study/Study of Latinos (2022) (3)
- The urinary tract microbiome in older women exhibits host genetics and environmental influences (2019) (3)
- Challenges in Determining the Role of Microbiome Evolution in Barrett’s Esophagus and Progression to Esophageal Adenocarcinoma (2021) (3)
- An Elegan(t) Screen for Drug-Microbe Interactions. (2017) (3)
- Consistent, comprehensive and computationally efficient OTU definitions (2014) (3)
- SARS-CoV-2 Distribution in Residential Housing Suggests Contact Deposition and Correlates with Rothia sp. (2022) (3)
- Reply to: Examining microbe–metabolite correlations by linear methods (2021) (3)
- Dynamic changes in short- and long-term bacterial composition following fecal microbiota transplantation for recurrent Clostridium difficile infection (2015) (3)
- Comparison of fecal and oral collection methods for studies of the human microbiota in two Iranian cohorts (2021) (3)
- Impact of Vaginal Estrogen on the Urobiome in Postmenopausal Women With Recurrent Urinary Tract Infection (2021) (3)
- Expanding the scope and scale of microbiome research (2019) (2)
- Greengenes2 enables a shared data universe for microbiome studies (2023) (2)
- Author Correction: Inflammation-induced IgA+ cells dismantle anti-liver cancer immunity (2018) (2)
- 850a The treatment-naive microbiome in early-onset Crohn's Disease (2014) (2)
- A Prebiotic Diet Alters the Fecal Microbiome and Improves Sleep in Response to Sleep Disruption in Rats (2022) (2)
- Mathematical Approaches for Describing Microbial Populations: Practice and Theory for Extrapolation of Rich Environments (2013) (2)
- Safer at school early alert: an observational study of wastewater and surface monitoring to detect COVID-19 in elementary schools (2023) (2)
- Zebra: Static and Dynamic Genome Cover Thresholds with Overlapping References (2022) (2)
- Kernel-based genetic association analysis for microbiome phenotypes identifies host genetic drivers of beta-diversity (2021) (2)
- Multi-Block Sparse Functional Principal Components Analysis for Longitudinal Microbiome Multi-Omics Data (2021) (2)
- Microbiome : Deciphering the last human body organ (2012) (2)
- Optimizing UniFrac with OpenACC Yields Greater Than One Thousand Times Speed Increase (2022) (2)
- Host biology, ecology and the environment influence microbial biomass and diversity in 101 marine fish species (2022) (2)
- Porting and optimizing UniFrac for GPUs: Reducing microbiome analysis runtimes by orders of magnitude (2020) (2)
- High‐calorie diet (HCD) induced elevation in calprotectin and lipocalin‐2 correlates with changes in gut bacteria and their metabolites in a porcine model (2015) (2)
- The gastrointestinal and microbiome impact of a resistant starch blend from potato, banana, and apple fibers: A randomized clinical trial using smart caps (2022) (2)
- Using Topological Data Analysis to find discrimination between microbial states in human microbiome data (2016) (2)
- Erratum to: The sponge microbiome project (2018) (2)
- Revisiting microbe-metabolite interactions: doing better than random (2019) (2)
- The promise of the microbiome: Function and dysfunction in humans and beyond (2014) (2)
- A prebiotic diet modulates microglial states and motor deficits in α-synuclein overexpressing mice (2022) (2)
- Reply to Putignani et al.: Vagina as a major source of natural inoculum for the newborn (2010) (2)
- 37 FECAL MICROBIOTA TRANSPLANATION IS HIGHLY EFFECTIVE IN REAL-WORLD PRACTICE: INITIAL RESULTS FROM THE AMERICAN GASTROENTEROLOGICAL ASSOCIATION FECAL MICROBIOTA TRANSPLANTATION NATIONAL REGISTRY (2020) (2)
- The impact of maternal asthma on the preterm infants' gut metabolome and microbiome (MAP study) (2022) (2)
- Optimizing sequencing protocols for leaderboard metagenomics by combining long and short reads (2019) (2)
- Microbiota as in farm homes protect children from asthma (2018) (2)
- Location-specific signatures of Crohn’s disease at a multi-omics scale (2022) (2)
- Stool multi-omics for the study of host–microbe interactions in inflammatory bowel disease (2022) (2)
- Tu1769 Short and Long Term Changes in Bacterial Composition Following Fecal Microbiota Transplantation for CDI Visualized in Movie Format (2014) (2)
- 279 Altered Gut Microbiota in Toll-Like Receptor-5 (TLR5) Deficient Mice Results in Metabolic Syndrome (2010) (2)
- Early-life gut dysbiosis linked to mass mortality in ostriches (2019) (2)
- Nitrite Generating and Depleting Capacity of the Oral Microbiome and Cardiometabolic Risk: Results from ORIGINS (2022) (2)
- Su1991 Diet-Induced Change in Gastrointestinal Transit Significantly Alters Distal Gut Microbial Communities (2012) (2)
- Compositionally Aware Phylogenetic Beta-Diversity Measures Better Resolve Microbiomes Associated with Phenotype (2022) (2)
- Time of Sample Collection Critical for Microbiome Replicability (2022) (2)
- Ribosomal RNA, the lens into life (2015) (2)
- OP31 Meta–omics reveals microbiome-driven proteolysis as a contributing factor to the severity of ulcerative colitis disease activity (2020) (2)
- Improving on public service (2008) (2)
- Applications and Comparison of Dimensionality Reduction Methods for Microbiome Data (2022) (2)
- The Poohsticks phenomenon (2004) (2)
- Limited microbiome differences in captive and semi-wild primate populations consuming similar diets. (2022) (2)
- New insight into the diversity of life's building blocks: evenness, not variance. (2011) (2)
- Su1911 Effects of Metronidazole on the Fecal Metabolome in Healthy Dogs: An Untargeted Metabolomics Approach (2016) (2)
- Multi-omic analysis along the gut-brain axis points to a functional architecture of autism (2022) (2)
- Database-Driven Grid Computing and Distributed Web Applications: A Comparison (2007) (2)
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- Authors’ reply to Mawer and Wilcox and Mullish and Williams (2015) (2)
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- Reply to Sun et al., “Identifying Composition Novelty in Microbiome Studies: Improvement of Prediction Accuracy” (2019) (1)
- Utilizing stability criteria in choosing feature selection methods yields reproducible results in microbiome data (2020) (1)
- Mice Lacking Toll-Like Receptor 5 Metabolic Syndrome and Altered Gut Microbiota in (2010) (1)
- Tu1963 Shift From Firmicutes-Enriched to Proteobacteria-Enriched and Specific Clostridials Reduction in Intestinal Microbiota Accociate With Activity of Inflammatory Bowel Disease (2016) (1)
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- Diet and the Gut Microbiome in 10-18-Month-Old Children Living in Urban Slums of Mumbai, India (OR01-08-19). (2019) (1)
- Title Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2 ' s q 2-feature-classifier plugin Permalink (2018) (1)
- From microbiomess to metabolomes to function during host-microbial interactions (2015) (1)
- Microbiome/Metabolic Syndrome/Diabetes and CVD (2015) (1)
- LB1505 Dupilumab-mediated IL-4Rα blockade decreases Staphylococcus aureus colonization and increases microbial diversity in patients with Atopic Dermatitis (AD) (2018) (1)
- Artificial Selection: Finding Function amongst Randomized Sequences (2008) (1)
- Abstract P459: Milk Intake, Host LCT Genotype and Gut Bifidobacteria in Relation to Obesity: Results From the Hispanic Community Health Study/Study of Latinos (HCHS/SOL) (2020) (1)
- P I – 3–5 Gut microbiota modulation of arsenic species in breastmilk (2018) (1)
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- Analytic Strategies for Understanding Host-Associated Microbial Communities: Faster and cheaper DNA sequencing technologies combined with open-access analytic software packages are opening new vistas (2011) (1)
- Correction for Morton et al., “Uncovering the Horseshoe Effect in Microbial Analyses” (2018) (1)
- The MS-Associated Gut Microbiome (2017) (1)
- Culturing: Looking it up in our gut (2016) (1)
- Impacts of the Marine Hatchery Built Environment on Mucosal Microbiome Colonization Across Ontogeny in Yellowtail Kingfish, Seriola Lalandi (2020) (1)
- The 15th Genomic Standards Consortium meeting (2013) (1)
- Abstract 18: Gut Microbiome Modifies the Protective Effects of a Mediterranean Dietary Pattern Against Diabetes Mellitus in US Hispanics/ Latinos: The Hispanic Community Health Study/ Study of Latinos (HCHS/SOL) (2020) (1)
- Feasibility of using alternative swabs and storage solutions for paired SARS-CoV-2 detection and microbiome analysis in the hospital environment (2020) (1)
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- 114 Stability of Gut Microbiome Alpha Diversity During Combined Sleep Restriction and Circadian Misalignment (2021) (1)
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- Genetic Code Evolution in the RNA World and Beyond (2002) (1)
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- Cross-biome comparison of microbial association networks this article openly available. Please share how this access benefits you. Your story matters (2015) (0)
- Alternative swabs and storage for SARS-CoV-2 detection in a hospital environment (2021) (0)
- Abstract P518: Distinctive Blood Metabolomic Profiles Between US-Born and Foreign-Born Hispanics/Latinos: The Hispanic Community Health Study/Study of Latinos (HCHS/SOL) (2023) (0)
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- Author Correction: Gut microbiome composition in the Hispanic Community Health Study/Study of Latinos is shaped by geographic relocation, environmental factors, and obesity (2020) (0)
- Sa1452: LONGITUDINAL METABOLOMICS IN THE STUDY OF PORTOSYSTEMIC SHUNTS AND HEPATIC ENCEPHALOPATHY (2022) (0)
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- Abstract 24: Association of the Gut Microbiome With Kidney Function and Damage in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL) (2023) (0)
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- 130 Individual Differences in Skin Temperature Responses to Cold Pressor Stress During Sleep Restriction and Circadian Misalignment (2021) (0)
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- Cutting Edge Developments in MS Research (2017) (0)
- Free starlight special bus services for New Years Eve (2010) (0)
- Wirrina redevelopment underway (2009) (0)
- Title : Multiple sclerosis-associated changes in the composition and immune functions of 1 spore-forming bacteria 2 3 Running title : Spore-forming bacteria in multiple sclerosis 4 5 (2018) (0)
- Timorese interns welcomed to the Territory (2009) (0)
- Generous Territorians help out after Cyclone Larry (2006) (0)
- Christmas cakes for senior Territorians (2008) (0)
- Short term accommodation boost for Alice Springs (2009) (0)
- Reply to Moossavi and Azad, “Quantifying and Interpreting the Association between Early-Life Gut Microbiota Composition and Childhood Obesity” (2019) (0)
- New technology in disaster management (2010) (0)
- Boosting services for senior Territorians (2008) (0)
- Northern Territory Government drives down greenhouse gas emissions (2010) (0)
- Ballot system open for affordable units (2009) (0)
- New tradies join Power and Water team (2011) (0)
- Housing ministers meet in Adelaide (2009) (0)
- Keeping staff close to home (2011) (0)
- Boosting short term accommodation - applications closing (2009) (0)
- Territory fishing just got that much better (2011) (0)
- Territory on show at the 2010 Land Warfare Conference (2010) (0)
- Organised crime high on SCLJ agenda (2011) (0)
- Funding boost for housing providers (2008) (0)
- 0110 Within-subject Consistency Of Increased Interleukin-6 Levels In Response To Combined Sleep Restriction And Circadian Misalignment In Humans (2019) (0)
- Shire council elections held (2008) (0)
- Territory on show at OzMine Expo (2010) (0)
- Boost for essential services in the bush (2012) (0)
- Territory on track to meet targets for new apprenticeships (2010) (0)
- Grants to benefit communities (2009) (0)
- Delivering affordable housing to Territorians (2009) (0)
- A strong voice and an open office door (2008) (0)
- Local government reform law passes (2008) (0)
- Landmark lease agreement signed with Julalikari (2008) (0)
- Territory councils benefit at Australian local government meeting (2008) (0)
- Asian Relations and Trade Minister to visit Vietnam and China (2011) (0)
- Reinvent your career launched (2010) (0)
- More affordable housing on the market (2008) (0)
- Budget 2008 delivering more for families in Central Australia (2008) (0)
- Housing work underway on Tiwi islands (2009) (0)
- Developing strong ties and securing the Territory's future (2012) (0)
- Enhanced computational methods for delineating microbial community composition (2011) (0)
- NT Government business confidence tops the nation (2010) (0)
- Local government leaders meet in Canberra (2009) (0)
- Get involved in National Youth Week 2011 (2011) (0)
- Using Structural Properties to Predict Behavior of Related Proteins : Does Protein Structure Influence Trypsin Miscleavage ? (2005) (0)
- Research and innovation grants now open (2011) (0)
- Cracking down on antisocial behaviour in public housing (2009) (0)
- Territory explores trade links with the Philippines (2011) (0)
- Rents will not rise for pensioners in Territory housing (2009) (0)
- Teachers union accept latest pay offer (2008) (0)
- Improving on public service - have your say (2009) (0)
- RIVERINA REGIONAL LIBRARY SOCIAL MEDIA POLICY (2014) (0)
- Boosting capacity from Darwin to Katherine (2012) (0)
- Budget 2011 delivers $1.5 million funding boost to Territory Wildlife Park (2011) (0)
- Welcome, Opening Remarks, Sponsor Acknowledgment, Accreditation Overview Connie W. Bales, PhD, RD, Chair, ASN Medical Nutrition Council (2015) (0)
- Minister attends first shire council meetings (2008) (0)
- Housing the Territory - boosting short term accommodation (2008) (0)
- More short term accommodation for the NT (2009) (0)
- Gadgets galore and social media secrets (2011) (0)
- Bellamack affordable housing lots now on sale (2009) (0)
- 1012 DIET AND FEEDING PATTERN AFFECT THE TERMINAL ILEUM MICROBIOME AND TRANSCRIPTOME CIRCADIAN DYNAMICS (2020) (0)
- Opportunities for business from record housing program (2009) (0)
- Territory Government delivers on indigenous graduates (2010) (0)
- Territory Government contract secures employment for indigenous Territorians (2011) (0)
- Regional variation limits applications of healthy gut microbiome reference ranges and disease models (2018) (0)
- Abstract P529: Altered Gut Microbiota in Obesity and Cardiometabolic Traits: Results From the Hispanic Community Health Study/Study of Latinos (2020) (0)
- Crystal structure of the A24U/U25A/A46G mutant xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthine (2013) (0)
- Earth microbial co-occurrence network reveals interconnection pattern across microbiomes (2020) (0)
- Home chemical and microbial transitions across urbanization (2019) (0)
- Stability of operational taxonomic units: an important but neglected property for analyzing microbial diversity (2015) (0)
- Early microbial markers of periodontal and cardiometabolic diseases in ORIGINS (2022) (0)
- Expanding the scope and scale of microbiome research (2019) (0)
- Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 (2019) (0)
- The murine vaginal microbiota and its perturbation by the human pathogen group B Streptococcus (2018) (0)
- Erratum to: Stability of operational taxonomic units: an important but neglected property for analyzing microbial diversity (2015) (0)
- Probiotic bacteria and bile acid profile are modulated by prebiotic diet and associate with facilitated diurnal clock/sleep realignment after chronic disruption of rhythms (2021) (0)
- Mass spectrometry searches using MASST (2020) (0)
- Creating a 3D microbial and chemical snapshot of a human habitat (2018) (0)
- Clean room microbiome complexity impacts planetary protection bioburden (2021) (0)
- The human microbiome in evolution (2017) (0)
- Context and the human microbiome (2015) (0)
- Candidate probiotic Lactiplantibacillus plantarum HNU082 rapidly and convergently evolves within human, mice, and zebrafish gut but differentially influences the resident microbiome (2021) (0)
- Farm-like indoor microbiota in non-farm homes protects children from asthma development (2019) (0)
- Reply to: Examining microbe–metabolite correlations by linear methods (2021) (0)
- Microbiome for Mars: surveying microbiome connections to healthcare with implications for long-duration human spaceflight, virtual workshop, July 13, 2020 (2021) (0)
- Fat and vitamin intakes during pregnancy have stronger relations with a pro-inflammatory maternal microbiota than does carbohydrate intake (2016) (0)
- Exposure to toxic metals triggers unique responses from the rat gut microbiota (2018) (0)
- Location-specific signatures of Crohn’s disease at a multi-omics scale (2022) (0)
- Methods for phylogenetic analysis of microbiome data (2018) (0)
- Normalization and microbial differential abundance strategies depend upon data characteristics (2017) (0)
- Patterns in Gut Microbiota Similarity Associated with Degree of Sociality among Sex Classes of a Neotropical Primate (2017) (0)
- Author Correction: Regional variation limits applications of healthy gut microbiome reference ranges and disease models (2018) (0)
- Enterotypes in the landscape of gut microbial community composition (2017) (0)
- Improving saliva shotgun metagenomics by chemical host DNA depletion (2018) (0)
- Neutrophilic proteolysis in the cystic fibrosis lung correlates with a pathogenic microbiome (2019) (0)
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0 (2020) (0)
- Establishing microbial composition measurement standards with reference frames (2019) (0)
- Semi-Automated Extraction of Viral RNA using the Omega Bio-tek Mag-Bind Viral DNA/RNA 96 Kit for SARS-CoV-2 Detection v1 (2021) (0)
- Correction to: Compositional and genetic alterations in Graves’ disease gut microbiome reveal specific diagnostic biomarkers (2022) (0)
- Sentinel Cards Provide Practical SARS-CoV-2 Monitoring in School Settings (2022) (0)
- The Impact of Exclusive Enteral Nutrition on the Gut Microbiome of Children with Medical Complexity. (2022) (0)
- Bacteroides genus is associated with lower executive function in cognitively unimpaired participants (2022) (0)
- The Molecular Effect of Wearing Silver-Threaded Clothing on the Human Skin (2023) (0)
- Characterization of SARS-CoV-2 Distribution and Microbial Succession in a Clinical Microbiology Testing Facility during the SARS-CoV-2 Pandemic (2023) (0)
- 1166: IN-PATIENT ANTIBIOTIC EXPOSURE PROMOTES SARS-COV-2 PERSISTENCE IN THE GI TRACT IN COVID-19 ADMITTED PATIENTS (2022) (0)
- Semi-Automated Extraction of Viral RNA using the MagMax Viral Pathogen (MVPII) 96 Kit for SARS-CoV-2 Detection v1 (2021) (0)
- The impact of kinship and social contact on the gut microbiota of wild, black howler monkeys (Alouatta pigra) (2016) (0)
- The emergence of microbiome centres (2019) (0)
- Representing Diet in a Tree-Based Format for Interactive and Exploratory Assessment of Dietary Intake Data (2022) (0)
- Bacterial metatranscriptomes in wastewater can differentiate virally infected human populations (2022) (0)
- inferences about integron evolution from genomic data. (2008) (0)
- Microbiome response in an urban river system is dominated by seasonality over wastewater treatment upgrades (2022) (0)
- Diet Quality and the Fecal Microbiota in Adults in the American Gut Project. (2023) (0)
- Abstract 69: Dietary Fiber, Gut Microbiota, Circulating Metabolomics, and Risk of Diabetes in US Hispanics/Latinos: The Hispanic Community Health Study/Study of Latinos (HCHS/SOL) (2023) (0)
- Evolutionary trends in host physiology outweigh dietary niche in structuring primate gut microbiomes (2018) (0)
- Environmental toxicants in breast milk of Norwegian mothers and gut bacteria composition and metabolites in their infants at 1 month (2019) (0)
- Abstract MP32: Healthy Dietary Patterns Are Associated With The Gut Microbiome In The Hispanic Community Health Study/Study Of Latinos (HCHS/SOL) (2022) (0)
- The microbiome quality control project: baseline study design and future directions (2015) (0)
- Meeting report for the 1st skin microbiota workshop, boulder, CO October 15-16 2012 (2014) (0)
- Unlocking capacities of viral genomics for the COVID-19 pandemic response (2021) (0)
- Patterns of Oral Microbiota Diversity in Adults and Children: A Crowdsourced Population Study (2020) (0)
- A gut microbiome signature for cirrhosis due to nonalcoholic fatty liver disease (2019) (0)
- improves sensitivity and speed of detection. (0)
- SARS-CoV-2 Distribution in Residential Housing Suggests Contact Deposition and Correlates with Rothia (2021) (0)
- Abstract MP28: The Association Between the Saliva Microbiome and Biomarkers of Cardiometabolic Disease in ORIGINS (2023) (0)
- Short Course in the Microbiome The Harvard community has made this article openly available. Please share how this access benefits you. Your story matters (2016) (0)
- Associations between SARS-CoV-2 and bacteria in the hospital environment (2021) (0)
- Abstract 5713: Assessing the real-world utility of cell-free microbial DNA in diagnosing early-stage lung cancer (2023) (0)
- The Impact of Maternal Asthma on the Preterm Infants' Gut Metabolome and Microbiome - The Microbiome, Atopic Disease, and Prematurity (MAP) Study (2021) (0)
- Global chemical effects of the microbiome include new bile-acid conjugations (2020) (0)
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